python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_3-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_3-50bp_fragment.36mers.hg19-female.unique.5p.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_2-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_2-50bp_fragment.36mers.hg19-female.unique.5p.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_1-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_1-50bp_fragment.36mers.hg19-female.unique.5p.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== SSFs_2-barcoded_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes SSFs_2-barcoded_fragment.36mers.hg19-female.unique.5p.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.5p.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_3-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_3-50bp_fragment.36mers.hg19-female.unique.5p.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_2-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_2-50bp_fragment.36mers.hg19-female.unique.5p.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== CTCF_1-50bp_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes CTCF_1-50bp_fragment.36mers.hg19-female.unique.5p.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== SSFs_2-barcoded_fragment.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes SSFs_2-barcoded_fragment.36mers.hg19-female.unique.5p.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.5p.minus.wig -notitle -uniqueBAM -RPM -stranded -