Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_3-50bp_fragment.36mers.hg19-female.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=CTCF_3-50bp_fragment.36mers.hg19-female.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_2-50bp_fragment.36mers.hg19-female.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=CTCF_2-50bp_fragment.36mers.hg19-female.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_1-50bp_fragment.36mers.hg19-female.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=CTCF_1-50bp_fragment.36mers.hg19-female.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=SSFs_2-barcoded_fragment.36mers.hg19-female.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=SSFs_2-barcoded_fragment.36mers.hg19-female.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.QC