Index of /kundaje/marinovg/oak/various/TF-models/2018-01-08-DamID-ChIPexo-ChEC/06-human-K562-CTCF-ChIP-exo

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]CTCF_1-50bp_fragment.36mers.hg19-female.unique.QC2018-01-17 06:10 184  
[ ]CTCF_1-50bp_fragment.36mers.hg19-female.unique.pdf2018-01-17 06:10 5.9K 
[ ]CTCF_1-50bp_fragment.lines2018-01-17 03:58 10  
[ ]CTCF_2-50bp_fragment.36mers.hg19-female.unique.QC2018-01-17 06:10 149  
[ ]CTCF_2-50bp_fragment.36mers.hg19-female.unique.pdf2018-01-17 06:10 6.0K 
[ ]CTCF_2-50bp_fragment.lines2018-01-17 03:58 10  
[ ]CTCF_3-50bp_fragment.36mers.hg19-female.unique.QC2018-01-17 06:13 132  
[ ]CTCF_3-50bp_fragment.36mers.hg19-female.unique.pdf2018-01-17 06:13 5.9K 
[ ]CTCF_3-50bp_fragment.lines2018-01-17 04:19 10  
[ ]K562-CTCF-ChIP-exo-test-30X_imbalance.json2018-07-11 16:52 182  
[ ]K562-CTCF-HA.json2018-07-11 16:52 152  
[TXT]PeakXus.sh2018-01-18 06:02 1.3K 
[ ]SAMstats-CTCF_1-50bp_fragment2018-01-18 04:46 155  
[ ]SAMstats-CTCF_2-50bp_fragment2018-01-18 04:48 155  
[ ]SAMstats-CTCF_3-50bp_fragment2018-01-18 04:58 155  
[ ]SAMstats-SSFs_1-barcoded_paired-end2018-01-18 04:36 154  
[ ]SAMstats-SSFs_2-barcoded_fragment2018-01-18 04:35 153  
[TXT]SPP.sh2018-01-17 01:51 1.1K 
[ ]SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.QC2018-01-17 06:07 139  
[ ]SSFs_1-barcoded_paired-end.36mers.hg19-female.unique.pdf2018-01-17 06:07 5.9K 
[ ]SSFs_1-barcoded_paired-end.lines2018-01-17 04:14 10  
[ ]SSFs_2-barcoded_fragment.36mers.hg19-female.unique.QC2018-01-17 06:06 135  
[ ]SSFs_2-barcoded_fragment.36mers.hg19-female.unique.pdf2018-01-17 06:06 5.9K 
[ ]SSFs_2-barcoded_fragment.lines2018-01-17 03:52 10  
[ ]datasetspec2018-07-11 16:52 94  
[TXT]fastq-dump.sh2018-01-16 20:37 865  
[TXT]make5primewigglefromBAM.sh2018-01-17 01:51 3.0K 
[TXT]makewigglefromBAM.sh2018-01-23 09:18 1.4K 
[TXT]map.sh2018-01-16 21:16 2.8K 
[ ]modelspec2018-07-11 16:52 77  
[ ]peakXus-CTCF.files2018-01-18 08:33 192  
[ ]peakXus-CTCF.table2018-01-18 10:46 204  
[ ]peakXus-CTCF_1-2-merged.bed.gz2018-07-11 16:52 12M 
[ ]peakXus-CTCF_1-2.IDR2018-01-18 08:39 19K 
[IMG]peakXus-CTCF_1-2.IDR.noalternatesummitpeaks.png2018-01-18 08:39 92K 
[IMG]peakXus-CTCF_1-2.IDR.png2018-01-18 08:39 92K 
[ ]peakXus-CTCF_1-3.IDR2018-01-18 08:27 31K 
[IMG]peakXus-CTCF_1-3.IDR.noalternatesummitpeaks.png2018-01-18 08:27 144K 
[IMG]peakXus-CTCF_1-3.IDR.png2018-01-18 08:27 144K 
[DIR]peakXus-CTCF_1-50bp_fragment/2018-01-18 08:21 -  
[ ]peakXus-CTCF_1-vs-2-intersection12018-07-11 16:52 6.2M 
[ ]peakXus-CTCF_1-vs-2-intersection22018-01-18 10:58 6.2M 
[ ]peakXus-CTCF_1-vs-2-outersection12018-01-18 10:58 8.0M 
[ ]peakXus-CTCF_1-vs-2-outersection22018-01-18 10:58 14M 
[DIR]peakXus-CTCF_2-50bp_fragment/2018-01-18 08:21 -  
[DIR]peakXus-CTCF_3-50bp_fragment/2018-01-18 08:21 -  
[TXT]peakXus-CTCF_3-50bp_fragmentlog.txt2018-01-18 05:47 1.9K 
[ ]predict-K562-CTCF-HA.json2018-07-11 16:52 107  
[DIR]tdfragonn-K562-CTCF-HA-test---04-CUTandRUN-1min-MACS-2.1.0.MACS-default-ambiguous/2018-07-11 16:53 -  
[DIR]tdfragonn-K562-CTCF-HA-test---04-CUTandRUN-1min-MACS-indpseudorep.MACS-default-ambiguous/2018-07-11 16:53 -  
[DIR]tdfragonn-K562-CTCF-HA-test---04-CUTandRUN-Native_ChIP_CTCF_medium_MNase-MACS-indrep.MACS-default-ambiguous/2025-04-06 20:01 -  
[DIR]tdfragonn-K562-CTCF-HA-test---05-ChIP-seq/2018-07-11 16:53 -  
[DIR]tdfragonn-K562-CTCF-HA-test-CUTnRUN_imbalance/2018-07-11 16:53 -  
[DIR]tdfragonn-K562-CTCF-HA/2025-04-06 20:01 -  
[ ]test---04-CUTandRUN-1min-MACS-2.1.0.MACS-default-ambiguous.json2018-07-11 16:53 219  
[ ]test---04-CUTandRUN-1min-MACS-indpseudorep.MACS-default-ambiguous.json2018-07-11 16:53 226  
[ ]test---04-CUTandRUN-Native_ChIP_CTCF_medium_MNase-MACS-indrep.MACS-default-ambiguous.json2018-07-11 16:53 230  
[ ]test---05-ChIP-seq.json2018-07-11 16:53 184  
[ ]test-K562-CTCF-HA.CUTnRUN_imbalance.json2018-07-11 16:53 180  
[ ]test-K562-CTCF-HA.json2018-07-11 16:53 162  
[DIR]tfdragonn-30X-imbalance-test-SequenceClassifier-K562-CTCF-ChIP-exo/2018-07-11 16:53 -  
[TXT]tfdragonn-train.sh2018-01-19 07:54 153  
[TXT]wigToBigWig.sh2018-01-23 09:19 4.0K 
[ ]z2018-05-29 12:50 2.8K 
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443