module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_0_6million_20160315_PS_HsDm_CTCF_0_6-GSM2247138.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_10million_20160315_PS_HsDm_CTCF_10-GSM2247140.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_15min_20160401_PS_HsDm_CTCF_15-GSM2247147.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_15s_20160628_PS_HsDm_CTCF_0602_B-GSM2433137.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_1min_20160414_PS_HsDm_CTCF_1m-GSM2247142.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_2_5million_20160315_PS_HsDm_CTCF_2_5-GSM2247139.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_27min_20160628_PS_HsDm_CTCF_0602_F-GSM2433138.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_2min_20160414_PS_HsDm_CTCF_2m-GSM2247143.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_30min_20160401_PS_HsDm_CTCF_30-GSM2247148.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_3min_20160628_PS_HsDm_CTCF_0602_D-GSM2433139.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_45min_20160401_PS_HsDm_CTCF_45-GSM2247149.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_45s_20160628_PS_HsDm_CTCF_0602_C-GSM2433140.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_4min_20160414_PS_HsDm_CTCF_4m-GSM2247144.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_5s_20160628_PS_HsDm_CTCF_0602_A-GSM2433141.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_7_5min_20160401_PS_HsDm_CTCF_7_5-GSM2247145.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_8min_20160414_PS_HsDm_CTCF_8m-GSM2247146.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_9min_20160628_PS_HsDm_CTCF_0602_E-GSM2433142.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.maxFL120bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.maxFL120bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.maxFL120bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.minFL150bp.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.minFL150bp.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --input-file-type narrowPeak --output-file Cut_and_Run_CTCF_disrupted_20160315_PS_HsDm_CTCF_expl_UB-GSM2247141.2x25mers.unique.minFL150bp.MACS-2.1.0.pseudoReps.IDR --rank p.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR