Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.FL20-75bp.pseudoRep1.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.FL20-75bp.pseudoRep2.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged.pseudoRep1.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.pseudoRep1.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged.pseudoRep2.bam -i=Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.pseudoRep2.bam -odir=Native_ChIP_CTCF_high_MNase.2x25mers.unique.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.FL20-75bp.pseudoRep1.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.FL20-75bp.pseudoRep2.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged.pseudoRep1.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.pseudoRep1.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged.pseudoRep2.bam -i=Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.pseudoRep2.bam -odir=Native_ChIP_CTCF_low_MNase.2x25mers.unique.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.FL20-75bp.pseudoRep1.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.FL20-75bp.pseudoRep2.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.FL20-75bp.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged.pseudoRep1.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.pseudoRep1.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged.pseudoRep2.bam -i=Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.pseudoRep2.bam -odir=Native_ChIP_CTCF_medium_MNase.2x25mers.unique.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_high_MNase_1_20150925_PS_Hs_N_CTCF_C-GSM2247154/Native_ChIP_CTCF_high_MNase_1_20150925_PS_Hs_N_CTCF_C-GSM2247154.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_high_MNase_1.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_high_MNase_2_20151104_PS_Hs_N_CTCF_C-GSM2247155/Native_ChIP_CTCF_high_MNase_2_20151104_PS_Hs_N_CTCF_C-GSM2247155.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_high_MNase_2.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_low_MNase_1_20150925_PS_Hs_N_CTCF_E-GSM2247150/Native_ChIP_CTCF_low_MNase_1_20150925_PS_Hs_N_CTCF_E-GSM2247150.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_low_MNase_1.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_low_MNase_2_20151104_PS_Hs_N_CTCF_E-GSM2247151/Native_ChIP_CTCF_low_MNase_2_20151104_PS_Hs_N_CTCF_E-GSM2247151.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_low_MNase_2.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_medium_MNase_1_20150925_PS_Hs_N_CTCF_D-GSM2247152/Native_ChIP_CTCF_medium_MNase_1_20150925_PS_Hs_N_CTCF_D-GSM2247152.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_medium_MNase_1.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_medium_MNase_2_20151104_PS_Hs_N_CTCF_D-GSM2247153/Native_ChIP_CTCF_medium_MNase_2_20151104_PS_Hs_N_CTCF_D-GSM2247153.2x25mers.unique.FL20-75bp.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.FL20-75bp.bam -odir=Native_ChIP_CTCF_medium_MNase_2.2x25mers.unique.FL20-75bp-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_high_MNase_1_20150925_PS_Hs_N_CTCF_C-GSM2247154/Native_ChIP_CTCF_high_MNase_1_20150925_PS_Hs_N_CTCF_C-GSM2247154.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.bam -odir=Native_ChIP_CTCF_high_MNase_1.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_high_MNase_2_20151104_PS_Hs_N_CTCF_C-GSM2247155/Native_ChIP_CTCF_high_MNase_2_20151104_PS_Hs_N_CTCF_C-GSM2247155.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158/Native_Input_high_MNase_20151207_PS_Hs_Input_C_ss-GSM2247158.2x25mers.unique.bam -odir=Native_ChIP_CTCF_high_MNase_2.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_low_MNase_1_20150925_PS_Hs_N_CTCF_E-GSM2247150/Native_ChIP_CTCF_low_MNase_1_20150925_PS_Hs_N_CTCF_E-GSM2247150.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.bam -odir=Native_ChIP_CTCF_low_MNase_1.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_low_MNase_2_20151104_PS_Hs_N_CTCF_E-GSM2247151/Native_ChIP_CTCF_low_MNase_2_20151104_PS_Hs_N_CTCF_E-GSM2247151.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156/Native_Input_low_MNase_20151207_PS_Hs_Input_E_ss-GSM2247156.2x25mers.unique.bam -odir=Native_ChIP_CTCF_low_MNase_2.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_medium_MNase_1_20150925_PS_Hs_N_CTCF_D-GSM2247152/Native_ChIP_CTCF_medium_MNase_1_20150925_PS_Hs_N_CTCF_D-GSM2247152.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.bam -odir=Native_ChIP_CTCF_medium_MNase_1.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_ChIP_CTCF_medium_MNase_2_20151104_PS_Hs_N_CTCF_D-GSM2247153/Native_ChIP_CTCF_medium_MNase_2_20151104_PS_Hs_N_CTCF_D-GSM2247153.2x25mers.unique.bam -i=/oak/stanford/groups/akundaje/marinovg/ENCODE4/CRISPR/datasets-CUTnRUN/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157/Native_Input_medium_MNase_20151207_PS_Hs_Input_D_ss-GSM2247157.2x25mers.unique.bam -odir=Native_ChIP_CTCF_medium_MNase_2.2x25mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &