python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep0-ENCFF000OSP.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.dedup.minus.wig -notitle -uniqueBAM -RPM -stranded -