Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique.bam -i=K562-Control-Snyder-Rep1-ENCFF002ECW.36mers.unique.bam -odir=K562-Oct4-Snyder-Rep1-ENCFF002EEQ.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique.bam -i=K562-Control-Snyder-Rep1-ENCFF002ECS.36mers.unique.bam -odir=K562-Oct4-Snyder-Rep1-ENCFF002EEN.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique.bam -i=GM23338-Control-HAIB-Rep1-ENCFF484RXR.36mers.unique.bam -odir=GM23338-Oct4-HAIB-Rep1-ENCFF647APA.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique.bam -i=GM23338-Control-HAIB-Rep2-ENCFF252PYF.36mers.unique.bam -odir=GM23338-Oct4-HAIB-Rep2-ENCFF986KEK.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique.bam -i=H1-hESC-Control-HAIB-Rep1-ENCFF000OST.36mers.unique.bam -odir=H1-hESC-Oct4-HAIB-Rep1-ENCFF000ORV.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique.bam -i=H1-hESC-Control-HAIB-Rep2-ENCFF000OSS.36mers.unique.bam -odir=H1-hESC-Oct4-HAIB-Rep2-ENCFF000ORW.36mers.unique-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=K562-Oct4-Snyder.dedup.merged.bam -i=K562-Control-Snyder.dedup.merged.bam -odir=K562-Oct4-Snyder.dedup.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GM23338-Oct4-HAIB.dedup.merged.bam -i=GM23338-Control-HAIB.dedup.merged.bam -odir=GM23338-Oct4-HAIB.dedup.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H1-hESC-Oct4-HAIB.dedup.merged.bam -i=H1-hESC-Control-HAIB.dedup.merged.bam -odir=H1-hESC-Oct4-HAIB.dedup.merged-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=K562-Oct4-Snyder.dedup.merged.pseudoRep1.bam -i=K562-Control-Snyder.dedup.merged.pseudoRep1.bam -odir=K562-Oct4-Snyder.dedup.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GM23338-Oct4-HAIB.dedup.merged.pseudoRep1.bam -i=GM23338-Control-HAIB.dedup.merged.pseudoRep1.bam -odir=GM23338-Oct4-HAIB.dedup.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H1-hESC-Oct4-HAIB.dedup.merged.pseudoRep1.bam -i=H1-hESC-Control-HAIB.dedup.merged.pseudoRep1.bam -odir=H1-hESC-Oct4-HAIB.dedup.merged.pseudoRep1-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=K562-Oct4-Snyder.dedup.merged.pseudoRep2.bam -i=K562-Control-Snyder.dedup.merged.pseudoRep2.bam -odir=K562-Oct4-Snyder.dedup.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GM23338-Oct4-HAIB.dedup.merged.pseudoRep2.bam -i=GM23338-Control-HAIB.dedup.merged.pseudoRep2.bam -odir=GM23338-Oct4-HAIB.dedup.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H1-hESC-Oct4-HAIB.dedup.merged.pseudoRep2.bam -i=H1-hESC-Control-HAIB.dedup.merged.pseudoRep2.bam -odir=H1-hESC-Oct4-HAIB.dedup.merged.pseudoRep2-SPP-300K -p=4 -npeak=300000 -savr -savn -rf &