Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_FA_ChIP-seq-GSM2754207.36mers.unique.dedup.pseudoRep1.bam -i=FA_input_DNA-GSM2754208.36mers.unique.dedup.pseudoRep1.bam -odir=BCL6_FA_ChIP-seq-GSM2754207-vs-FA_input_DNA-GSM2754208.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_FA_ChIP-seq-GSM2754207.36mers.unique.dedup.pseudoRep1.bam -i=FA_IgG_control-GSM2754209.36mers.unique.dedup.pseudoRep1.bam -odir=BCL6_FA_ChIP-seq-GSM2754207-vs-FA_IgG_control-GSM2754209.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep1.bam -i=UV_input_DNA-GSM2754204.36mers.unique.dedup.pseudoRep1.bam -odir=BCL6_UV-ChIP-seq_merged-vs-UV_input_DNA-GSM2754204.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep1.bam -i=UV_IgG_control-GSM2754205.36mers.unique.dedup.pseudoRep1.bam -odir=BCL6_UV-ChIP-seq_merged-vs-UV_IgG_control-GSM2754205.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep1.bam -i=minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.pseudoRep1.bam -odir=BCL6_UV-ChIP-seq_merged-vs-minusUV_control_ChIP-GSM2754206.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.pseudoRep1.bam -i=GSE29282-OCI-LY1_BCL6_D-8_INPUT-GSM763405.36mers.unique.dedup.pseudoRep1.bam -odir=GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.pseudoRep1.bam -i=GSE29282-OCI-LY1_BCL6_N-3_rep2_INPUT-GSM763403.36mers.unique.dedup.pseudoRep1.bam -odir=GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.pseudoRep1.bam -i=GSE46663-LY1_WCE_DMSO-GSM1133654.36mers.unique.dedup.pseudoRep1.bam -odir=GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.pseudoRep1-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_FA_ChIP-seq-GSM2754207.36mers.unique.dedup.pseudoRep2.bam -i=FA_input_DNA-GSM2754208.36mers.unique.dedup.pseudoRep2.bam -odir=BCL6_FA_ChIP-seq-GSM2754207-vs-FA_input_DNA-GSM2754208.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_FA_ChIP-seq-GSM2754207.36mers.unique.dedup.pseudoRep2.bam -i=FA_IgG_control-GSM2754209.36mers.unique.dedup.pseudoRep2.bam -odir=BCL6_FA_ChIP-seq-GSM2754207-vs-FA_IgG_control-GSM2754209.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep2.bam -i=UV_input_DNA-GSM2754204.36mers.unique.dedup.pseudoRep2.bam -odir=BCL6_UV-ChIP-seq_merged-vs-UV_input_DNA-GSM2754204.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep2.bam -i=UV_IgG_control-GSM2754205.36mers.unique.dedup.pseudoRep2.bam -odir=BCL6_UV-ChIP-seq_merged-vs-UV_IgG_control-GSM2754205.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_merged.36mers.unique.dedup.pseudoRep2.bam -i=minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.pseudoRep2.bam -odir=BCL6_UV-ChIP-seq_merged-vs-minusUV_control_ChIP-GSM2754206.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.pseudoRep2.bam -i=GSE29282-OCI-LY1_BCL6_D-8_INPUT-GSM763405.36mers.unique.dedup.pseudoRep2.bam -odir=GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.pseudoRep2.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.pseudoRep2.bam -i=GSE29282-OCI-LY1_BCL6_N-3_rep2_INPUT-GSM763403.36mers.unique.dedup.pseudoRep2.bam -odir=GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.pseudoRep2.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.pseudoRep2.bam -i=GSE46663-LY1_WCE_DMSO-GSM1133654.36mers.unique.dedup.pseudoRep2.bam -odir=GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.pseudoRep2.dedup.pseudoRep2-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -i=UV_input_DNA-GSM2754204.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-UV_input_DNA-GSM2754204.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -i=UV_input_DNA-GSM2754204.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-UV_input_DNA-GSM2754204.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -i=UV_IgG_control-GSM2754205.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-UV_IgG_control-GSM2754205.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -i=UV_IgG_control-GSM2754205.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-UV_IgG_control-GSM2754205.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -i=minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-minusUV_control_ChIP-GSM2754206.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -i=minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.bam -odir=BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-minusUV_control_ChIP-GSM2754206.dedup-SPP-300K -p=8 -npeak=300000 -savr -savn -rf &