/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -c UV_input_DNA-GSM2754204.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-UV_input_DNA-GSM2754204.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -c UV_input_DNA-GSM2754204.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-UV_input_DNA-GSM2754204.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -c UV_IgG_control-GSM2754205.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-UV_IgG_control-GSM2754205.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -c UV_IgG_control-GSM2754205.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-UV_IgG_control-GSM2754205.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl1-GSM2754202.36mers.unique.dedup.bam -c minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl1-GSM2754202-vs-minusUV_control_ChIP-GSM2754206.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BCL6_UV-ChIP-seq_repl2-GSM2754203.36mers.unique.dedup.bam -c minusUV_control_ChIP-GSM2754206.36mers.unique.dedup.bam -n BCL6_UV-ChIP-seq_repl2-GSM2754203-vs-minusUV_control_ChIP-GSM2754206.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.bam -c GSE29282-OCI-LY1_BCL6_D-8_INPUT-GSM763405.36mers.unique.dedup.bam -n GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.bam -c GSE29282-OCI-LY1_BCL6_N-3_rep2_INPUT-GSM763403.36mers.unique.dedup.bam -n GSE29282-OCI-LY1_BCL6_N-3_rep2_CHIP-GSM763402.36mers.unique.dedup.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.bam -c GSE46663-LY1_WCE_DMSO-GSM1133654.36mers.unique.dedup.bam -n GSE46663-LY1_BCL6_DMSO-GSM1133657.36mers.unique.dedup.MACS-2.1.0 -g hs -f BAM