# R script for Peak Model
#  -- generated by MACS
p <- c(0.0357059663319,0.0416304824363,0.0477624117675,0.0536074930191,0.0594834656023,0.0594636068891,0.0595364221708,0.0598012050135,0.0600615748088,0.0601741075169,0.0604190316463,0.0604433034069,0.0605293578308,0.0608978472868,0.0609044668579,0.0605911404941,0.0603528359357,0.0601365966142,0.0597681071581,0.0597151505896,0.0597019114475,0.0595893787394,0.0593356285151,0.0591833783806,0.0591767588096,0.0594614003654,0.059620270071,0.0595452482656,0.0597305962554,0.0598298898214,0.0598497485346,0.0599358029585,0.0599490421006,0.0598519550583,0.059889465961,0.0597614875871,0.0596026178815,0.0596820527343,0.0595298025998,0.059591585263,0.059520976505,0.0594944982207,0.0596114439762,0.0598144441556,0.059889465961,0.0601829336116,0.0605050860702,0.0605756948282,0.060619825302,0.0605403904492,0.0605072925939,0.0604609555964,0.0604984664991,0.0602667815118,0.060350629412,0.0601255639957,0.0599335964348,0.0598916724847,0.060024063906,0.0602182379907,0.0603373902699,0.0604940534518,0.0603903468384,0.0604962599754,0.0604675751675,0.0605293578308,0.0606440970626,0.0606617492521,0.0607786950076,0.0605734883046,0.0606374774915,0.0604962599754,0.0604609555964,0.0605823143993,0.0605337708782,0.0602645749881,0.0602623684644,0.060222651038,0.0602270640854,0.0602270640854,0.0602094118959,0.0602623684644,0.0600924661404,0.0599733138612,0.0599468355769,0.0602116184196,0.0599711073375,0.0600681943798,0.0599159442453,0.0598629876768,0.0596423353079,0.0596599874974,0.0598607811531,0.0596335092131,0.0596423353079,0.0596467483553,0.0598100311082,0.0596599874974,0.0596092374526,0.0596224765947,0.0598607811531,0.0599490421006,0.060052748714,0.060449922978,0.0602778141303,0.0601983792775,0.0602380967039,0.0602976728435,0.0604366838358,0.0607124992969,0.0605006730228,0.0605050860702,0.0605271513071,0.0603087054619,0.0604433034069,0.0604697816912,0.0602910532724,0.0604278577411,0.0603881403147,0.0601674879458,0.0604057925042,0.0603285641751,0.060216031467,0.0603704881252,0.0605072925939,0.0607213253917,0.0608162059103,0.0607169123443,0.0606573362047,0.0607257384391,0.0606926405837,0.0609265320948,0.0610192060897,0.061080988753,0.0610147930423,0.0608779885736,0.0609794886633,0.0608581298604,0.0608779885736,0.0609243255711,0.0609044668579,0.0607588362944,0.0607411841049,0.0606043796362,0.0607764884839,0.0608956407631,0.060853716813,0.0610765757056,0.0612244127927,0.061080988753,0.0609949343291,0.0610699561345,0.0611493909873,0.0610721626582,0.0609971408528,0.0608448907183,0.0610478908976,0.0611229127031,0.0611692497005,0.0613104672166,0.0614825760643,0.0615421522039,0.0616657175305,0.0618223807124,0.0620893700787,0.0622416202133,0.0621467396947,0.0621180548867,0.0621202614104,0.0622570658791,0.0622967833055,0.0622835441634,0.0624335877742,0.0622195549764,0.062051859176,0.0620584787471,0.0620033156549,0.0619238808021,0.0617142610517,0.061619380533,0.0616326196752,0.0618069350466,0.0617451523833,0.0620231743681,0.0620739244129,0.0619393264679,0.0620650983182,0.0620408265576,0.0621136418393,0.0622217615001,0.0623365007319,0.0623166420187,0.0621533592657,0.0621401201236,0.0621974897395,0.0622967833055,0.0622261745475,0.0623828377294,0.0624710986769,0.0624975769612,0.062385044253,0.0622239680238,0.0620474461287,0.0620959896498,0.0621665984079,0.0621665984079,0.0621776310263,0.0620915766024,0.061917261231,0.06195256561,0.0616877827674,0.0619371199442,0.0621555657894,0.0621004026972,0.061945946039,0.0620761309366,0.0622394136896,0.0622394136896,0.0626652727615,0.0624710986769,0.0627645663275,0.062577011814,0.0626520336194,0.0624733052006,0.0626498270957,0.0626432075246,0.0628285555145,0.0627800119933,0.0626674792852,0.0629499143174,0.0630271426465,0.06321469716,0.0632014580179,0.0633161972497,0.0633095776786,0.0632853059181,0.063179392781,0.0633801864367,0.0631948384468,0.0632124906363,0.063243381968,0.063108784023,0.0630955448808,0.0633338494392,0.0633360559629,0.0635809800924,0.063448588671,0.0634265234342,0.0635809800924,0.0634816865264,0.0637552954638,0.063775154177,0.0641061327303,0.064178948012,0.0642672089596,0.0643731220966,0.0645143396127,0.0646621766999,0.0648872421161,0.0653108946644,0.0652093945747,0.065540373128,0.0652535250485,0.0654035686593,0.0654476991331,0.0653881229935,0.0656882102152,0.0657168950231,0.0659794713421,0.0658448733971,0.065866938634,0.0661935041399,0.066539928359,0.0665796457854,0.0666061240697,0.0665465479301,0.0666767328277,0.0669304830519,0.0668775264834,0.0669525482888,0.0672702877,0.067206298513,0.0672438094158,0.0675858205875,0.0680447775148,0.0684640170157,0.0686648106713,0.0687574846663,0.0691370067407,0.0694194417729,0.069432680915,0.0695628658127,0.0699953444557,0.0699379748398,0.0700262357873,0.0703307360564,0.0705800732332,0.0709971062104,0.0713633891427,0.0719679766334,0.0726917164034,0.0732565864677,0.0738876522427,0.0747548160524,0.0754763492986,0.0762442195423,0.0773541009578,0.0783933736152,0.0791811025721,0.079834233584,0.0803307014139,0.0809132236678,0.081400865403,0.0820164855122,0.0825747360054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m <- 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ycorr <- 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altd  <- c(158)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('GSE29282-OCI-LY1_BCL6_D-8_CHIP-GSM763404.36mers.unique.dedup.MACS-2.1.0_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 158',bty='n')
dev.off()