python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r1-GSM1562329.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r1-GSM1562329.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r1-GSM1562329.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r1-GSM1562329.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r2-GSM1562330.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r2-GSM1562330.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r2-GSM1562330.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r2-GSM1562330.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input-ChIPseq-GSM1562338.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Input-ChIPseq-GSM1562338.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input-ChIPseq-GSM1562338.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Input-ChIPseq-GSM1562338.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r1-GSM1562327.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r1-GSM1562327.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r2-GSM1562328.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r2-GSM1562328.36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r1-GSM1562329.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r1-GSM1562329.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r2-GSM1562330.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r2-GSM1562330.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input-ChIPseq-GSM1562338.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Input-ChIPseq-GSM1562338.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r1-GSM1562327.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r1-GSM1562327.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r2-GSM1562328.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r2-GSM1562328.36mers.unique.plus.wig -notitle -uniqueBAM -RPM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r1-GSM1562329.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r1-GSM1562329.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== GFP-DamID-r2-GSM1562330.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes GFP-DamID-r2-GSM1562330.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input-ChIPseq-GSM1562338.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Input-ChIPseq-GSM1562338.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-ChIPseq-shNup153-2-GSM1562332.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r1-GSM1562327.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r1-GSM1562327.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Oct4-DamID-r2-GSM1562328.36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes Oct4-DamID-r2-GSM1562328.36mers.unique.minus.wig -notitle -uniqueBAM -RPM -stranded -