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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.bam -c Input-ChIPseq-GSM1562338.36mers.unique.dedup.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.MACS-2.1.0 -g mm -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.dedup.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.bam -c Input-ChIPseq-GSM1562338.36mers.unique.dedup.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.dedup.merged.bam -c GFP-DamID.dedup.merged.bam -n Oct4-DamID.dedup.merged.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.pseudoRep1.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.dedup.pseudoRep1.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.pseudoRep1.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.dedup.pseudoRep1.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.pseudoRep1.bam -c Input-ChIPseq-GSM1562338.36mers.unique.dedup.pseudoRep1.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.dedup.pseudoRep1.merged.bam -c GFP-DamID.dedup.pseudoRep1.merged.bam -n Oct4-DamID.dedup.pseudoRep1.merged.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.pseudoRep2.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.dedup.pseudoRep2.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.dedup.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.pseudoRep2.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.dedup.pseudoRep2.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.dedup.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.pseudoRep2.bam -c Input-ChIPseq-GSM1562338.36mers.unique.dedup.pseudoRep2.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.dedup.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.dedup.pseudoRep2.merged.bam -c GFP-DamID.dedup.pseudoRep2.merged.bam -n Oct4-DamID.dedup.pseudoRep2.merged.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1