/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.MACS-2.1.0 -g mm -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.MACS-2.1.0 -g mm -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.bam -c Input-ChIPseq-GSM1562338.36mers.unique.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.MACS-2.1.0 -g mm -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.bam -c Input-ChIPseq-GSM1562338.36mers.unique.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.merged.bam -c GFP-DamID.merged.bam -n Oct4-DamID.merged.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.pseudoRep1.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.pseudoRep1.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.pseudoRep1.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.pseudoRep1.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.pseudoRep1.bam -c Input-ChIPseq-GSM1562338.36mers.unique.pseudoRep1.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.merged.pseudoRep1.bam -c GFP-DamID.merged.pseudoRep1.bam -n Oct4-DamID.merged.pseudoRep1.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r1-GSM1562327.36mers.unique.pseudoRep2.bam -c GFP-DamID-r1-GSM1562329.36mers.unique.pseudoRep2.bam -n Oct4-DamID-r1-GSM1562327.36mers.unique.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID-r2-GSM1562328.36mers.unique.pseudoRep2.bam -c GFP-DamID-r2-GSM1562330.36mers.unique.pseudoRep2.bam -n Oct4-DamID-r2-GSM1562328.36mers.unique.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.pseudoRep2.bam -c Input-ChIPseq-GSM1562338.36mers.unique.pseudoRep2.bam -n Oct4-ChIPseq-shCtrl-GSM1562331.36mers.unique.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Oct4-DamID.merged.pseudoRep2.bam -c GFP-DamID.merged.pseudoRep2.bam -n Oct4-DamID.merged.pseudoRep2.MACS-2.1.0.p1e-1 -g mm -f BAM --to-large -p 1e-1 --keep-dup all