/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Akashiwo-sanguinea.PFAM27-A --tblout reviewed_ALL.clean.pep.Akashiwo-sanguinea.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Akashiwo-sanguinea.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-andersonii-CCMP2222.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-andersonii-CCMP2222.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-andersonii-CCMP2222.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-catenella.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-catenella.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-catenella.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-fundyense.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-fundyense.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-fundyense.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-margalefi-CS.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-margalefi-CS.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-margalefi-CS.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-minutumHALIM-CCMP113.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-minutumHALIM-CCMP113.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-minutumHALIM-CCMP113.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-monilatum-JR08.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-monilatum-JR08.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-monilatum-JR08.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Alexandrium-tamarense.PFAM27-A --tblout reviewed_ALL.clean.pep.Alexandrium-tamarense.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Alexandrium-tamarense.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Amphidinium-carterae-CCMP1314.PFAM27-A --tblout reviewed_ALL.clean.pep.Amphidinium-carterae-CCMP1314.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Amphidinium-carterae-CCMP1314.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Amphidinium-massartii.PFAM27-A --tblout reviewed_ALL.clean.pep.Amphidinium-massartii.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Amphidinium-massartii.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Azadinium-spinosum-3D9.PFAM27-A --tblout reviewed_ALL.clean.pep.Azadinium-spinosum-3D9.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Azadinium-spinosum-3D9.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Ceratium-fusus.PFAM27-A --tblout reviewed_ALL.clean.pep.Ceratium-fusus.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Ceratium-fusus.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Crypthecodinium-cohnii.PFAM27-A --tblout reviewed_ALL.clean.pep.Crypthecodinium-cohnii.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Crypthecodinium-cohnii.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Dinophysis-acuminata-DAEP01.PFAM27-A --tblout reviewed_ALL.clean.pep.Dinophysis-acuminata-DAEP01.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Dinophysis-acuminata-DAEP01.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Durinskia-baltica.PFAM27-A --tblout reviewed_ALL.clean.pep.Durinskia-baltica.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Durinskia-baltica.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Gambierdiscus-australes-CAWD149.PFAM27-A --tblout reviewed_ALL.clean.pep.Gambierdiscus-australes-CAWD149.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Gambierdiscus-australes-CAWD149.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Gambierdiscus-sp.PFAM27-A --tblout reviewed_ALL.clean.pep.Gambierdiscus-sp.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Gambierdiscus-sp.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Glenodinium-foliaceum.PFAM27-A --tblout reviewed_ALL.clean.pep.Glenodinium-foliaceum.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Glenodinium-foliaceum.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Gonyaulax-spinifera-CCMP409.PFAM27-A --tblout reviewed_ALL.clean.pep.Gonyaulax-spinifera-CCMP409.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Gonyaulax-spinifera-CCMP409.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Gymnodinium-catenatum.PFAM27-A --tblout reviewed_ALL.clean.pep.Gymnodinium-catenatum.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Gymnodinium-catenatum.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Gyrodinium-dominans.PFAM27-A --tblout reviewed_ALL.clean.pep.Gyrodinium-dominans.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Gyrodinium-dominans.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Heterocapsa-arctica.PFAM27-A --tblout reviewed_ALL.clean.pep.Heterocapsa-arctica.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Heterocapsa-arctica.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Heterocapsa-rotundata.PFAM27-A --tblout reviewed_ALL.clean.pep.Heterocapsa-rotundata.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Heterocapsa-rotundata.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Heterocapsa-triquetra.PFAM27-A --tblout reviewed_ALL.clean.pep.Heterocapsa-triquetra.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Heterocapsa-triquetra.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Karlodinium-micrum.PFAM27-A --tblout reviewed_ALL.clean.pep.Karlodinium-micrum.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Karlodinium-micrum.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Kryptoperidinium-foliaceum-CCMP1326.PFAM27-A --tblout reviewed_ALL.clean.pep.Kryptoperidinium-foliaceum-CCMP1326.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Kryptoperidinium-foliaceum-CCMP1326.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Lessardia-elongata.PFAM27-A --tblout reviewed_ALL.clean.pep.Lessardia-elongata.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Lessardia-elongata.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Lingulodinium-polyedra-CCMP1738.PFAM27-A --tblout reviewed_ALL.clean.pep.Lingulodinium-polyedra-CCMP1738.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Lingulodinium-polyedra-CCMP1738.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Noctiluca-scintillans.PFAM27-A --tblout reviewed_ALL.clean.pep.Noctiluca-scintillans.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Noctiluca-scintillans.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Oxyrrhis-marina.PFAM27-A --tblout reviewed_ALL.clean.pep.Oxyrrhis-marina.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Oxyrrhis-marina.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Oxyrrhis-marina-CCMP788.PFAM27-A --tblout reviewed_ALL.clean.pep.Oxyrrhis-marina-CCMP788.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Oxyrrhis-marina-CCMP788.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Pelagodinium-beii.PFAM27-A --tblout reviewed_ALL.clean.pep.Pelagodinium-beii.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Pelagodinium-beii.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Peridinium-aciculiferum-PAER.PFAM27-A --tblout reviewed_ALL.clean.pep.Peridinium-aciculiferum-PAER.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Peridinium-aciculiferum-PAER.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Polarella-glacialis.PFAM27-A --tblout reviewed_ALL.clean.pep.Polarella-glacialis.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Polarella-glacialis.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Prorocentrum-lima-CCMP684.PFAM27-A --tblout reviewed_ALL.clean.pep.Prorocentrum-lima-CCMP684.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Prorocentrum-lima-CCMP684.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Prorocentrum-micans.PFAM27-A --tblout reviewed_ALL.clean.pep.Prorocentrum-micans.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Prorocentrum-micans.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Prorocentrum-minimum-CCMP1329.PFAM27-A --tblout reviewed_ALL.clean.pep.Prorocentrum-minimum-CCMP1329.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Prorocentrum-minimum-CCMP1329.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Protoceratium-reticulatum.PFAM27-A --tblout reviewed_ALL.clean.pep.Protoceratium-reticulatum.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Protoceratium-reticulatum.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Pyrocystis-lunula-CCCM517.PFAM27-A --tblout reviewed_ALL.clean.pep.Pyrocystis-lunula-CCCM517.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Pyrocystis-lunula-CCCM517.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Pyrodinium-bahamense.PFAM27-A --tblout reviewed_ALL.clean.pep.Pyrodinium-bahamense.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Pyrodinium-bahamense.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Scrippsiella-cf-hangoei-SHHI.PFAM27-A --tblout reviewed_ALL.clean.pep.Scrippsiella-cf-hangoei-SHHI.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Scrippsiella-cf-hangoei-SHHI.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Scrippsiella-hangoei.PFAM27-A --tblout reviewed_ALL.clean.pep.Scrippsiella-hangoei.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Scrippsiella-hangoei.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Scrippsiella-nutricula.PFAM27-A --tblout reviewed_ALL.clean.pep.Scrippsiella-nutricula.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Scrippsiella-nutricula.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Scrippsiella-trochoidea-CCMP-3099.PFAM27-A --tblout reviewed_ALL.clean.pep.Scrippsiella-trochoidea-CCMP-3099.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Scrippsiella-trochoidea-CCMP-3099.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-goreaui-typeC1.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-goreaui-typeC1.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-goreaui-typeC1.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-sp--A3.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-sp--A3.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-sp--A3.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-sp--C15.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-sp--C15.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-sp--C15.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP2430.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP2430.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP2430.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP421.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP421.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-sp--CCMP421.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 16 -o reviewed_ALL.clean.pep.Symbiodinium-sp--Mp.PFAM27-A --tblout reviewed_ALL.clean.pep.Symbiodinium-sp--Mp.PFAM27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm reviewed_ALL.clean.pep.Symbiodinium-sp--Mp.faa
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