export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Amphidinium_carterae-Acart.genome.v1/Acart.genome.v1.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Amphidinium_carterae-Acart.genome.v1/bwa-indexes/Acart.genome.v1.fa