Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C-scaffold.FINAL-r10 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C-scaffold.FINAL-r10 -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C-3D_DNA-r10/Acart.genome.v1.FINAL.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C-3D_DNA-r10/bwa-indexes/Acart.genome.v1.FINAL.fa                                                                                                                                                                          
Sequenced Read Pairs:  747,098,834
 Normal Paired: 472,633,686 (63.26%)
 Chimeric Paired: 143,186,084 (19.17%)
 Chimeric Ambiguous: 98,361,849 (13.17%)
 Unmapped: 32,917,215 (4.41%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 615,819,770 (82.43%)
WARN [2024-02-13T19:58:16,679]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 462,716,065 (61.94%)
PCR Duplicates: 153,103,705 (20.49%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,023,350,879