/oak/stanford/groups/akundaje/marinovg/programs/stringtie-2.0.Linux_x86_64/stringtie SRR3337493-STAR/STAR-2.5.3a-Aligned.sortedByCoord.out.bam -o SRR3337493-STAR.stringite-2.0.gtf -p 20 -A SRR3337493-STAR.stringite-2.0.quant