#!/bin/bash
#SBATCH --job-name=zFK-RR-1
#SBATCH --output=zFK-RR.1.out
#SBATCH --error=zFK-RR.1.err
#SBATCH --time=48:00:00
#SBATCH -p akundaje,sfgf,wjg
#SBATCH --cpus-per-task=1
#SBATCH --mem=100000
#SBATCH -C NO_GPU
module load system; module load parallel/20180122; ./run-asm-pipeline-post-review.sh --sort-output -r /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-09-18-Fugacium_kawagutii-Hi-C/juicer-Fugacium_kawagutii_V3-Hi-C-3D_DNA-r20/Fugacium_kawagutii_V3_genome_scaffold.20.review.assembly /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Fugacium_kawagutii_V3/sequence/Fugacium_kawagutii_V3_genome_scaffold.fa /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2023-09-18-Fugacium_kawagutii-Hi-C/juicer-Fugacium_kawagutii_V3-Hi-C/aligned/merged_nodups.txt