#!/bin/bash

fa=$1
GD=`pwd`
cd ..
RD=`pwd`
cd $GD
uid=$(id -u ${USER})

docker run \
	-v $GD:/genome \
	-v $RD:/genomes \
	-w /genome \
      docker-tellread  \
	bash -c "adduser --uid $uid --disabled-password --quiet  myuser &>log; chown -R myuser:myuser /genome /genomes; su myuser -c \
		'/tellysis/tellread/CreateGenomeIndexesBed $fa $GD /genomes'"