java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks100.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks100.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks100.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks100.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks100.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks100.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks101.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks101.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks101.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks101.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks101.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks101.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks102.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks102.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks102.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks102.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks102.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks102.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks103.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks103.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks103.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks103.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks103.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks103.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks104.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks104.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks104.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks104.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks104.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks104.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks105.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks105.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks105.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks105.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks105.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks105.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks106.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks106.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks106.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks106.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks106.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks106.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks107.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks107.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks107.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks107.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks107.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks107.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks108.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks108.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks108.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks108.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks108.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks108.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks109.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks109.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks109.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks109.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks109.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks109.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks110.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks110.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks110.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks110.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks110.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks110.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks111.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks111.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks111.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks111.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks111.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks111.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks112.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks112.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks112.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks112.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks112.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks112.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks113.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks113.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks113.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks113.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks113.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks113.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks114.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks114.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks114.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks114.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks114.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks114.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks115.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks115.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks115.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks115.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks115.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks115.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks116.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks116.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks116.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks116.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks116.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks116.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks117.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks117.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks117.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks117.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks117.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks117.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks118.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks118.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks118.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks118.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks118.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks118.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks119.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks119.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks119.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks119.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks119.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks119.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks120.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks120.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks120.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks120.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks120.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks120.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks121.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks121.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks121.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks121.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks121.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks121.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks122.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks122.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks122.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks122.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks122.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks122.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks123.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks123.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks123.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks123.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks123.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks123.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks124.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks124.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks124.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks124.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks124.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks124.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks125.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks125.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks125.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks125.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks125.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks125.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks126.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks126.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks126.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks126.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks126.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks126.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks127.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks127.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks127.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks127.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks127.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks127.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks128.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks128.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks128.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks128.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks128.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks128.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks129.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks129.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks129.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks129.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks129.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks129.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks130.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks130.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks130.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks130.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks130.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks130.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks131.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks131.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks131.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks131.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks131.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks131.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks132.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks132.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks132.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks132.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks132.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks132.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks133.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks133.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks133.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks133.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks133.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks133.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks134.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks134.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks134.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks134.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks134.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks134.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks135.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks135.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks135.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks135.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks135.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks135.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks136.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks136.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks136.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks136.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks136.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks136.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks137.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks137.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks137.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks137.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks137.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks137.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks138.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks138.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks138.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks138.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks138.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks138.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks139.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks139.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks139.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks139.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks139.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks139.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks140.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks140.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks140.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks140.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks140.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks140.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks141.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks141.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks141.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks141.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks141.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks141.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks142.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks142.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks142.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks142.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks142.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks142.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks143.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks143.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks143.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks143.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks143.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks143.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks144.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks144.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks144.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks144.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks144.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks144.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks145.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks145.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks145.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks145.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks145.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks145.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks146.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks146.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks146.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks146.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks146.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks146.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks147.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks147.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks147.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks147.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks147.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks147.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks148.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks148.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks148.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks148.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks148.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks148.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks149.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks149.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks149.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks149.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks149.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks149.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks14.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks14.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks150.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks150.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks150.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks150.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks150.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks150.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks151.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks151.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks151.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks151.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks151.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks151.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks152.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks152.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks152.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks152.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks152.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks152.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks153.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks153.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks153.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks153.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks153.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks153.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks154.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks154.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks154.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks154.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks154.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks154.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks155.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks155.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks155.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks155.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks155.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks155.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks156.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks156.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks156.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks156.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks156.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks156.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks157.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks157.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks157.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks157.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks157.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks157.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks158.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks158.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks158.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks158.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks158.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks158.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks159.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks159.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks159.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks159.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks159.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks159.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks15.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks15.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks160.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks160.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks160.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks160.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks160.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks160.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks161.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks161.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks161.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks161.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks161.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks161.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks162.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks162.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks162.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks162.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks162.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks162.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks163.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks163.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks163.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks163.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks163.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks163.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks164.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks164.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks164.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks164.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks164.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks164.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks165.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks165.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks165.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks165.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks165.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks165.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks166.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks166.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks166.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks166.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks166.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks166.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks167.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks167.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks167.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks167.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks167.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks167.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks168.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks168.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks168.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks168.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks168.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks168.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks169.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks169.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks169.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks169.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks169.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks169.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks16.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks16.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks170.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks170.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks170.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks170.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks170.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks170.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks171.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks171.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks171.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks171.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks171.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks171.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks172.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks172.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks172.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks172.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks172.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks172.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks173.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks173.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks173.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks173.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks173.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks173.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks174.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks174.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks174.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks174.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks174.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks174.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks175.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks175.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks175.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks175.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks175.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks175.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks176.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks176.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks176.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks176.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks176.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks176.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks177.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks177.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks177.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks177.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks177.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks177.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks178.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks178.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks178.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks178.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks178.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks178.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks179.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks179.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks179.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks179.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks179.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks179.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks17.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks17.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks180.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks180.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks180.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks180.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks180.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks180.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks181.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks181.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks181.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks181.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks181.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks181.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks182.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks182.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks182.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks182.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks182.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks182.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks183.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks183.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks183.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks183.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks183.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks183.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks184.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks184.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks184.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks184.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks184.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks184.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks185.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks185.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks185.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks185.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks185.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks185.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks186.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks186.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks186.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks186.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks186.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks186.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks187.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks187.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks187.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks187.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks187.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks187.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks188.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks188.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks188.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks188.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks188.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks188.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks189.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks189.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks189.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks189.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks189.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks189.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks18.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks18.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks190.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks190.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks190.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks190.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks190.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks190.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks191.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks191.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks191.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks191.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks191.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks191.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks192.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks192.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks192.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks192.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks192.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks192.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks193.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks193.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks193.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks193.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks193.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks193.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks194.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks194.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks194.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks194.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks194.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks194.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks195.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks195.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks195.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks195.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks195.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks195.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks196.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks196.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks196.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks196.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks196.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks196.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks197.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks197.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks197.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks197.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks197.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks197.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks198.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks198.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks198.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks198.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks198.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks198.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks199.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks199.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks199.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks199.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks199.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks199.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks19.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks19.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks1.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks1.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks200.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks200.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks200.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks200.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks200.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks200.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks201.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks201.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks201.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks201.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks201.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks201.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks202.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks202.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks202.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks202.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks202.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks202.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks203.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks203.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks203.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks203.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks203.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks203.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks204.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks204.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks204.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks204.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks204.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks204.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks205.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks205.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks205.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks205.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks205.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks205.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks206.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks206.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks206.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks206.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks206.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks206.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks207.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks207.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks207.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks207.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks207.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks207.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks208.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks208.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks208.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks208.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks208.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks208.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks209.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks209.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks209.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks209.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks209.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks209.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks20.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks20.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks210.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks210.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks210.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks210.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks210.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks210.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks211.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks211.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks211.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks211.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks211.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks211.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks212.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks212.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks212.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks212.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks212.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks212.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks213.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks213.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks213.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks213.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks213.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks213.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks214.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks214.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks214.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks214.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks214.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks214.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks215.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks215.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks215.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks215.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks215.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks215.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks216.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks216.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks216.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks216.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks216.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks216.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks217.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks217.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks217.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks217.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks217.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks217.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks218.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks218.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks218.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks218.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks218.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks218.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks219.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks219.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks219.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks219.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks219.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks219.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks21.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks21.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks220.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks220.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks220.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks220.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks220.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks220.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks221.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks221.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks221.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks221.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks221.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks221.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks222.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks222.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks222.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks222.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks222.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks222.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks223.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks223.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks223.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks223.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks223.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks223.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks224.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks224.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks224.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks224.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks224.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks224.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks225.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks225.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks225.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks225.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks225.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks225.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks226.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks226.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks226.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks226.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks226.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks226.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks227.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks227.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks227.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks227.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks227.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks227.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks228.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks228.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks228.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks228.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks228.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks228.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks229.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks229.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks229.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks229.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks229.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks229.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks22.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks22.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks230.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks230.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks230.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks230.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks230.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks230.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks231.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks231.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks231.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks231.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks231.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks231.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks232.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks232.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks232.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks232.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks232.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks232.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks233.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks233.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks233.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks233.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks233.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks233.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks234.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks234.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks234.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks234.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks234.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks234.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks235.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks235.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks235.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks235.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks235.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks235.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks236.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks236.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks236.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks236.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks236.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks236.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks237.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks237.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks237.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks237.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks237.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks237.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks238.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks238.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks238.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks238.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks238.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks238.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks239.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks239.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks239.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks239.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks239.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks239.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks23.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks23.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks240.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks240.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks240.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks240.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks240.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks240.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks241.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks241.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks241.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks241.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks241.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks241.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks242.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks242.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks242.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks242.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks242.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks242.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks243.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks243.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks243.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks243.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks243.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks243.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks244.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks244.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks244.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks244.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks244.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks244.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks245.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks245.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks245.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks245.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks245.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks245.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks246.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks246.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks246.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks246.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks246.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks246.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks247.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks247.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks247.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks247.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks247.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks247.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks248.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks248.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks248.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks248.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks248.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks248.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks249.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks249.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks249.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks249.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks249.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks249.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks24.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks24.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks250.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks250.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks250.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks250.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks250.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks250.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks251.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks251.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks251.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks251.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks251.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks251.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks252.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks252.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks252.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks252.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks252.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks252.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks253.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks253.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks253.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks253.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks253.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks253.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks254.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks254.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks254.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks254.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks254.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks254.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks255.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks255.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks255.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks255.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks255.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks255.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks256.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks256.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks256.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks256.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks256.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks256.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks257.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks257.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks257.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks257.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks257.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks257.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks258.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks258.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks258.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks258.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks258.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks258.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks259.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks259.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks259.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks259.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks259.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks259.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks25.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks260.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks260.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks260.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks260.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks260.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks260.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks261.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks261.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks261.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks261.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks261.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks261.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks262.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks262.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks262.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks262.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks262.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks262.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks263.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks263.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks263.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks263.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks263.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks263.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks264.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks264.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks264.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks264.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks264.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks264.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks265.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks265.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks265.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks265.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks265.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks265.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks266.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks266.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks266.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks266.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks266.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks266.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks267.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks267.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks267.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks267.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks267.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks267.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks268.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks268.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks268.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks268.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks268.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks268.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks269.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks269.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks269.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks269.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks269.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks269.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks270.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks270.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks270.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks270.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks270.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks270.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks271.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks271.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks271.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks271.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks271.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks271.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks272.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks272.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks272.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks272.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks272.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks272.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks273.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks273.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks273.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks273.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks273.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks273.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks274.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks274.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks274.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks274.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks274.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks274.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks275.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks275.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks275.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks275.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks275.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks275.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks276.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks276.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks276.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks276.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks276.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks276.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks277.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks277.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks277.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks277.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks277.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks277.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks278.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks278.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks278.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks278.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks278.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks278.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks279.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks279.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks279.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks279.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks279.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks279.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks27.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks27.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks280.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks280.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks280.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks280.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks280.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks280.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks281.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks281.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks281.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks281.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks281.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks281.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks282.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks282.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks282.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks282.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks282.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks282.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks283.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks283.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks283.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks283.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks283.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks283.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks284.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks284.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks284.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks284.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks284.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks284.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks285.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks285.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks285.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks285.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks285.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks285.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks286.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks286.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks286.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks286.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks286.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks286.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks287.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks287.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks287.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks287.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks287.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks287.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks288.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks288.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks288.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks288.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks288.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks288.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks289.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks289.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks289.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks289.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks289.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks289.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks290.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks290.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks290.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks290.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks290.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks290.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks291.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks291.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks291.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks291.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks291.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks291.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks292.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks292.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks292.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks292.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks292.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks292.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks293.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks293.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks293.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks293.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks293.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks293.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks294.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks294.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks294.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks294.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks294.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks294.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks295.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks295.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks295.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks295.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks295.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks295.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks296.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks296.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks296.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks296.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks296.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks296.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks297.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks297.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks297.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks297.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks297.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks297.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks298.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks298.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks298.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks298.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks298.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks298.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks299.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks299.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks299.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks299.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks299.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks299.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks300.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks300.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks300.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks300.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks300.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks300.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks301.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks301.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks301.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks301.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks301.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks301.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks302.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks302.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks302.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks302.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks302.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks302.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks303.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks303.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks303.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks303.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks303.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks303.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks304.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks304.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks304.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks304.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks304.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks304.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks305.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks305.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks305.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks305.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks305.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks305.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks306.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks306.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks306.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks306.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks306.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks306.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks307.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks307.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks307.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks307.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks307.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks307.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks308.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks308.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks308.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks308.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks308.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks308.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks309.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks309.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks309.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks309.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks309.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks309.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks310.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks310.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks310.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks310.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks310.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks310.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks311.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks311.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks311.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks311.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks311.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks311.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks312.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks312.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks312.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks312.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks312.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks312.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks313.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks313.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks313.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks313.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks313.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks313.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks314.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks314.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks314.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks314.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks314.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks314.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks315.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks315.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks315.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks315.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks315.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks315.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks316.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks316.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks316.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks316.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks316.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks316.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks317.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks317.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks317.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks317.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks317.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks317.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks318.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks318.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks318.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks318.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks318.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks318.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks319.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks319.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks319.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks319.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks319.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks319.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks31.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks31.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks320.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks320.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks320.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks320.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks320.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks320.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks321.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks321.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks321.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks321.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks321.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks321.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks322.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks322.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks322.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks322.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks322.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks322.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks323.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks323.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks323.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks323.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks323.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks323.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks324.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks324.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks324.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks324.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks324.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks324.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks325.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks325.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks325.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks325.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks325.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks325.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks326.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks326.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks326.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks326.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks326.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks326.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks327.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks327.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks327.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks327.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks327.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks327.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks328.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks328.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks328.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks328.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks328.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks328.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks329.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks329.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks329.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks329.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks329.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks329.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks32.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks32.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks330.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks330.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks330.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks330.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks330.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks330.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks331.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks331.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks331.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks331.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks331.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks331.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks332.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks332.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks332.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks332.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks332.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks332.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks333.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks333.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks333.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks333.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks333.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks333.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks334.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks334.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks334.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks334.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks334.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks334.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks335.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks335.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks335.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks335.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks335.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks335.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks336.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks336.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks336.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks336.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks336.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks336.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks337.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks337.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks337.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks337.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks337.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks337.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks338.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks338.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks338.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks338.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks338.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks338.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks339.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks339.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks339.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks339.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks339.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks339.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks340.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks340.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks340.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks340.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks340.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks340.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks341.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks341.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks341.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks341.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks341.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks341.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks342.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks342.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks342.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks342.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks342.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks342.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks343.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks343.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks343.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks343.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks343.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks343.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks344.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks344.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks344.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks344.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks344.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks344.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks345.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks345.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks345.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks345.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks345.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks345.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks346.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks346.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks346.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks346.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks346.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks346.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks347.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks347.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks347.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks347.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks347.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks347.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks348.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks348.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks348.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks348.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks348.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks348.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks349.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks349.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks349.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks349.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks349.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks349.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks350.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks350.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks350.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks350.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks350.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks350.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks351.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks351.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks351.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks351.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks351.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks351.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks352.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks352.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks352.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks352.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks352.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks352.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks353.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks353.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks353.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks353.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks353.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks353.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks354.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks354.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks354.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks354.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks354.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks354.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks355.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks355.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks355.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks355.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks355.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks355.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks356.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks356.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks356.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks356.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks356.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks356.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks357.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks357.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks357.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks357.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks357.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks357.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks358.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks358.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks358.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks358.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks358.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks358.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks359.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks359.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks359.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks359.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks359.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks359.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks360.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks360.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks360.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks360.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks360.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks360.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks361.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks361.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks361.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks361.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks361.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks361.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks362.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks362.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks362.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks362.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks362.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks362.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks363.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks363.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks363.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks363.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks363.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks363.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks364.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks364.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks364.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks364.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks364.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks364.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks365.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks365.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks365.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks365.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks365.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks365.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks366.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks366.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks366.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks366.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks366.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks366.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks367.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks367.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks367.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks367.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks367.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks367.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks368.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks368.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks368.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks368.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks368.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks368.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks369.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks369.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks369.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks369.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks369.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks369.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks36.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks36.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks370.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks370.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks370.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks370.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks370.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks370.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks371.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks371.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks371.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks371.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks371.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks371.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks372.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks372.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks372.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks372.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks372.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks372.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks373.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks373.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks373.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks373.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks373.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks373.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks374.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks374.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks374.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks374.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks374.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks374.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks375.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks375.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks375.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks375.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks375.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks375.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks376.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks376.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks376.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks376.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks376.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks376.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks377.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks377.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks377.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks377.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks377.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks377.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks378.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks378.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks378.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks378.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks378.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks378.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks379.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks379.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks379.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks379.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks379.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks379.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks37.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks37.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks380.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks380.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks380.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks380.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks380.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks380.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks381.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks381.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks381.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks381.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks381.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks381.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks382.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks382.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks382.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks382.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks382.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks382.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks383.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks383.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks383.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks383.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks383.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks383.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks384.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks384.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks384.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks384.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks384.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks384.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks385.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks385.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks385.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks385.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks385.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks385.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks386.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks386.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks386.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks386.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks386.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks386.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks387.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks387.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks387.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks387.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks387.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks387.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks388.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks388.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks388.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks388.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks388.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks388.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks389.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks389.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks389.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks389.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks389.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks389.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks390.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks390.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks390.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks390.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks390.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks390.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks391.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks391.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks391.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks391.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks391.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks391.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks392.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks392.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks392.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks392.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks392.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks392.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks393.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks393.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks393.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks393.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks393.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks393.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks394.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks394.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks394.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks394.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks394.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks394.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks395.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks395.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks395.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks395.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks395.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks395.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks396.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks396.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks396.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks396.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks396.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks396.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks397.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks397.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks397.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks397.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks397.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks397.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks398.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks398.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks398.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks398.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks398.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks398.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks399.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks399.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks399.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks399.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks399.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks399.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks400.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks400.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks400.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks400.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks400.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks400.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks401.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks401.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks401.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks401.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks401.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks401.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks402.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks402.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks402.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks402.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks402.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks402.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks403.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks403.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks403.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks403.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks403.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks403.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks404.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks404.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks404.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks404.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks404.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks404.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks405.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks405.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks405.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks405.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks405.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks405.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks406.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks406.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks406.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks406.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks406.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks406.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks407.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks407.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks407.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks407.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks407.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks407.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks408.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks408.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks408.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks408.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks408.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks408.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks409.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks409.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks409.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks409.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks409.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks409.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks40.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks40.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks410.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks410.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks410.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks410.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks410.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks410.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks411.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks411.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks411.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks411.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks411.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks411.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks412.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks412.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks412.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks412.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks412.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks412.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks413.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks413.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks413.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks413.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks413.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks413.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks414.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks414.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks414.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks414.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks414.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks414.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks415.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks415.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks415.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks415.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks415.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks415.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks416.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks416.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks416.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks416.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks416.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks416.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks417.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks417.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks417.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks417.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks417.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks417.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks418.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks418.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks418.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks418.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks418.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks418.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks419.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks419.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks419.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks419.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks419.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks419.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks420.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks420.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks420.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks420.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks420.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks420.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks421.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks421.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks421.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks421.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks421.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks421.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks422.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks422.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks422.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks422.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks422.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks422.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks423.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks423.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks423.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks423.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks423.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks423.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks424.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks424.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks424.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks424.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks424.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks424.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks425.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks425.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks425.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks425.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks425.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks425.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks426.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks426.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks426.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks426.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks426.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks426.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks427.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks427.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks427.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks427.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks427.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks427.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks428.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks428.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks428.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks428.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks428.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks428.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks429.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks429.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks429.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks429.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks429.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks429.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks430.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks430.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks430.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks430.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks430.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks430.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks431.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks431.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks431.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks431.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks431.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks431.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks45.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks45.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks4.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks4.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks54.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks54.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks59.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks59.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks63.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks63.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks64.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks64.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks68.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks68.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks69.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks69.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks72.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks72.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks88.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks88.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks89.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks89.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks89.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks89.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks89.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks89.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks90.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks90.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks90.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks90.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks90.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks90.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks91.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks91.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks91.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks91.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks91.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks91.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks92.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks92.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks92.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks92.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks92.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks92.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks93.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks93.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks93.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks93.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks93.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks93.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks94.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks94.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks94.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks94.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks94.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks94.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks95.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks95.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks95.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks95.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks95.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks95.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks96.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks96.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks96.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks96.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks96.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks96.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks97.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks97.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks97.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks97.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks97.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks97.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks98.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks98.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks98.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks98.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks98.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks98.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks99.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks99.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks99.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks99.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks99.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks99.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1620-Polarella_glacialis_CCMP2088-Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks14.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks14.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks15.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks15.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks16.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks16.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks17.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks17.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks18.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks18.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks19.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks19.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks1.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks1.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks20.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks20.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks21.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks21.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks22.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks22.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks23.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks23.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks24.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks24.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks25.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks27.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks27.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks31.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks31.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks32.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks32.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks36.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks36.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks37.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks37.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks40.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks40.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks45.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks45.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks4.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks4.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks54.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks54.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks59.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks59.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks63.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks63.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks64.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks64.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks68.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks68.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks69.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks69.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks72.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks72.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks88.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks88.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks89.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks89.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks89.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks89.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks89.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks89.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks90.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks90.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks90.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks90.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks90.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks90.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks91.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks91.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks91.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks91.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks91.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks91.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1621-Pavlovia_cf._CCMP459-Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks100.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks100.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks101.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks101.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks102.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks102.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks103.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks103.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks104.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks104.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks105.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks105.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks106.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks106.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks107.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks107.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks108.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks108.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks109.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks109.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks110.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks110.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks111.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks111.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks112.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks112.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks113.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks113.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks114.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks114.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks115.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks115.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks116.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks116.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks117.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks117.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks118.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks118.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks119.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks119.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks120.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks120.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks121.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks121.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks122.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks122.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks123.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks123.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks124.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks124.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks125.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks125.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks126.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks126.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks127.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks127.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks128.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks128.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks129.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks129.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks130.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks130.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks131.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks131.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks132.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks132.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks133.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks133.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks134.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks134.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks135.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks135.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks136.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks136.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks137.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks137.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks138.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks138.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks139.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks139.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks140.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks140.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks14.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks14.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks15.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks15.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks16.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks16.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks17.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks17.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks18.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks18.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks19.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks19.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks1.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks1.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks20.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks20.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks21.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks21.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks22.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks22.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks23.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks23.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks24.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks24.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks25.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks27.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks27.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks31.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks31.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks32.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks32.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks36.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks36.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks37.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks37.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks40.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks40.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks45.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks45.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks4.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks4.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks54.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks54.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks59.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks59.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks63.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks63.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks64.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks64.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks68.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks68.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks69.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks69.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks72.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks72.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks88.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks88.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks89.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks89.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks90.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks90.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks91.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks91.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks92.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks92.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks93.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks93.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks94.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks94.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks95.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks95.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks96.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks96.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks97.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks97.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks98.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks98.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks99.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks99.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1622-Tetrahymena_borealis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz 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SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz 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SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz 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SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz 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SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz 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L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1623-Tetrahymena_pyrrhiformis-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks14.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks14.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks15.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks15.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks16.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks16.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks17.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks17.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks18.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks18.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks19.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks19.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks1.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks1.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks20.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks20.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks21.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks21.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks22.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks22.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks23.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks23.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks24.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks24.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks25.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks27.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks27.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks31.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks31.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks32.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks32.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks36.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks36.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks37.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks37.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks40.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks40.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks45.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks45.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks4.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks4.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks54.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks54.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks59.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks59.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks63.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks63.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks64.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks64.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks68.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks68.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks69.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks69.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks72.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks72.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks88.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks88.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks0.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks0.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks100.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks100.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks100.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks101.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks101.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks101.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks102.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks102.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks102.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks103.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks103.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks103.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks104.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks104.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks104.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks105.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks105.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks105.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks106.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks106.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks106.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks107.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks107.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks107.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks108.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks108.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks108.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks109.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks109.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks109.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks10.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks10.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks110.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks110.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks110.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks111.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks111.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks111.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks112.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks112.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks112.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks113.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks113.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks113.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks114.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks114.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks114.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks115.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks115.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks115.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks116.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks116.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks116.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks117.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks117.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks117.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks118.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks118.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks118.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks119.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks119.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks119.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks11.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks11.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks120.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks120.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks120.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks121.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks121.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks121.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks122.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks122.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks122.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks123.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks123.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks123.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks124.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks124.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks124.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks125.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks125.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks125.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks126.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks126.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks126.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks127.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks127.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks127.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks128.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks128.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks128.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks129.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks129.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks129.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks12.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks12.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks130.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks130.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks130.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks131.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks131.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks131.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks132.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks132.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks132.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks133.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks133.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks133.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks134.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks134.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks134.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks135.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks135.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks135.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks136.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks136.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks136.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks137.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks137.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks137.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks138.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks138.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks138.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks139.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks139.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks139.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks13.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks13.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks140.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks140.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks140.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks141.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks141.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks141.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks141.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks141.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks141.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks142.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks142.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks142.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks142.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks142.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks142.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks143.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks143.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks143.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks143.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks143.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks143.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks144.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks144.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks144.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks144.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks144.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks144.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks145.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks145.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks145.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks145.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks145.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks145.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks146.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks146.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks146.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks146.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks146.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks146.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks147.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks147.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks147.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks147.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks147.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks147.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks148.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks148.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks148.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks148.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks148.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks148.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks149.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks149.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks149.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks149.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks149.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks149.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks14.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks14.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks150.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks150.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks150.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks150.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks150.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks150.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks151.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks151.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks151.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks151.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks151.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks151.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks152.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks152.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks152.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks152.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks152.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks152.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks153.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks153.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks153.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks153.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks153.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks153.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks154.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks154.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks154.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks154.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks154.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks154.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks155.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks155.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks155.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks155.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks155.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks155.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks156.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks156.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks156.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks156.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks156.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks156.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks157.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks157.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks157.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks157.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks157.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks157.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks158.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks158.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks158.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks158.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks158.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks158.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks159.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks159.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks159.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks159.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks159.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks159.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks15.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks15.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks160.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks160.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks160.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks160.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks160.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks160.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks161.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks161.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks161.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks161.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks161.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks161.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks162.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks162.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks162.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks162.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks162.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks162.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks163.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks163.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks163.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks163.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks163.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks163.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks164.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks164.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks164.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks164.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks164.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks164.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks165.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks165.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks165.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks165.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks165.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks165.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks166.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks166.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks166.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks166.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks166.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks166.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks167.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks167.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks167.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks167.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks167.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks167.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks168.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks168.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks168.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks168.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks168.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks168.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks169.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks169.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks169.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks169.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks169.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks169.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks16.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks16.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks170.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks170.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks170.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks170.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks170.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks170.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks171.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks171.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks171.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks171.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks171.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks171.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks172.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks172.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks172.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks172.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks172.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks172.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks173.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks173.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks173.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks173.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks173.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks173.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks174.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks174.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks174.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks174.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks174.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks174.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks175.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks175.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks175.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks175.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks175.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks175.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks176.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks176.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks176.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks176.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks176.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks176.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks177.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks177.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks177.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks177.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks177.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks177.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks178.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks178.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks178.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks178.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks178.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks178.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks179.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks179.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks179.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks179.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks179.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks179.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks17.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks17.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks180.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks180.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks180.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks180.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks180.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks180.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks181.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks181.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks181.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks181.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks181.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks181.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks182.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks182.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks182.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks182.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks182.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks182.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks183.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks183.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks183.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks183.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks183.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks183.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks184.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks184.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks184.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks184.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks184.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks184.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks185.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks185.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks185.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks185.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks185.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks185.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks186.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks186.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks186.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks186.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks186.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks186.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks187.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks187.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks187.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks187.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks187.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks187.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks188.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks188.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks188.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks188.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks188.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks188.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks189.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks189.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks189.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks189.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks189.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks189.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks18.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks18.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks190.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks190.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks190.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks190.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks190.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks190.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks191.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks191.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks191.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks191.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks191.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks191.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks192.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks192.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks192.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks192.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks192.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks192.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks193.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks193.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks193.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks193.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks193.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks193.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks194.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks194.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks194.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks194.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks194.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks194.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks195.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks195.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks195.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks195.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks195.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks195.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks196.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks196.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks196.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks196.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks196.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks196.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks197.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks197.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks197.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks197.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks197.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks197.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks198.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks198.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks198.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks198.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks198.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks198.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks199.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks199.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks199.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks199.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks199.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks199.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks19.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks19.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks1.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks1.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks200.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks200.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks200.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks200.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks200.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks200.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks201.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks201.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks201.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks201.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks201.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks201.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks202.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks202.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks202.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks202.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks202.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks202.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks203.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks203.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks203.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks203.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks203.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks203.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks204.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks204.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks204.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks204.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks204.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks204.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks205.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks205.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks205.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks205.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks205.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks205.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks206.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks206.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks206.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks206.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks206.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks206.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks207.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks207.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks207.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks207.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks207.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks207.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks208.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks208.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks208.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks208.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks208.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks208.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks209.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks209.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks209.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks209.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks209.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks209.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks20.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks20.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks210.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks210.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks210.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks210.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks210.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks210.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks211.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks211.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks211.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks211.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks211.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks211.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks212.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks212.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks212.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks212.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks212.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks212.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks213.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks213.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks213.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks213.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks213.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks213.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks214.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks214.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks214.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks214.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks214.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks214.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks215.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks215.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks215.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks215.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks215.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks215.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks216.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks216.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks216.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks216.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks216.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks216.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks217.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks217.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks217.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks217.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks217.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks217.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks218.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks218.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks218.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks218.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks218.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks218.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks219.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks219.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks219.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks219.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks219.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks219.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks21.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks21.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks220.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks220.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks220.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks220.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks220.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks220.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks221.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks221.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks221.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks221.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks221.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks221.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks222.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks222.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks222.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks222.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks222.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks222.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks223.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks223.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks223.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks223.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks223.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks223.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks224.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks224.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks224.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks224.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks224.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks224.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks225.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks225.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks225.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks225.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks225.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks225.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks226.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks226.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks226.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks226.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks226.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks226.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks227.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks227.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks227.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks227.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks227.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks227.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks228.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks228.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks228.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks228.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks228.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks228.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks229.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks229.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks229.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks229.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks229.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks229.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks22.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks22.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks230.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks230.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks230.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks230.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks230.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks230.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks231.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks231.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks231.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks231.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks231.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks231.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks232.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks232.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks232.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks232.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks232.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks232.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks233.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks233.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks233.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks233.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks233.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks233.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks234.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks234.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks234.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks234.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks234.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks234.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks235.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks235.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks235.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks235.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks235.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks235.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks23.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks23.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks24.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks24.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks25.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks25.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks26.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks26.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks27.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks27.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks28.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks28.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks29.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks29.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks2.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks2.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks30.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks30.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks31.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks31.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks32.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks32.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks33.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks33.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks34.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks34.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks35.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks35.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks36.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks36.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks37.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks37.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks38.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks38.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks39.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks39.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks3.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks3.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks40.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks40.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks41.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks41.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks42.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks42.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks43.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks43.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks44.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks44.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks45.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks45.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks46.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks46.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks47.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks47.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks48.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks48.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks49.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks49.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks4.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks4.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks50.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks50.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks51.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks51.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks52.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks52.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks53.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks53.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks54.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks54.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks55.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks55.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks56.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks56.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks57.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks57.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks58.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks58.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks59.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks59.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks5.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks5.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks60.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks60.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks61.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks61.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks62.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks62.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks63.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks63.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks64.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks64.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks65.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks65.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks66.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks66.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks67.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks67.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks68.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks68.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks69.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks69.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks6.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks6.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks70.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks70.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks71.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks71.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks72.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks72.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks73.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks73.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks74.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks74.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks75.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks75.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks76.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks76.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks77.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks77.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks78.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks78.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks79.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks79.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks7.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks7.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks80.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks80.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks81.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks81.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks82.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks82.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks83.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks83.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks84.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks84.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks85.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks85.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks86.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks86.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks87.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks87.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks88.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks88.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks89.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks89.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks89.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks8.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks8.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks90.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks90.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks90.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks91.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks91.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks91.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks92.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks92.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks92.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks93.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks93.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks93.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks94.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks94.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks94.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks95.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks95.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks95.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks96.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks96.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks96.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks97.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks97.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks97.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks98.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks98.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks98.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks99.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks99.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks99.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end1.chunks9.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.end2.chunks9.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1625-Tetrahymena_malaccensis_Tetrahymena_eliotti-MboI_MseI_Hi-C.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end1.chunks0.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end2.chunks0.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end1.chunks1.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end2.chunks1.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end1.chunks2.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end2.chunks2.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end1.chunks3.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.end2.chunks3.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1709-Haloferax_volcanii_exponential_NOMe.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks0.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks0.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks1.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks1.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks2.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks2.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks3.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks3.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks4.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks4.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks5.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks5.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks6.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks6.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks7.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks7.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks8.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks8.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end1.chunks9.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.end2.chunks9.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1710-Haloferax_volcanii_exponential_dSMF.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks0.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks0.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks10.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks10.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks11.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks11.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks12.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks12.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks13.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks13.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks14.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks14.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks15.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks15.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks1.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks1.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks2.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks2.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks3.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks3.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks4.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks4.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks5.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks5.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks6.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks6.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks7.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks7.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks8.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks8.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks9.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks9.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1711-Haloferax_volcanii_stationary_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks0.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks0.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks1.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks1.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks2.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks2.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks3.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks3.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks4.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks4.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks5.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks5.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks6.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks6.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks7.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks7.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks8.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks8.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks9.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks9.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1712-Haloferax_volcanii_stationary_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks0.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks0.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks10.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks10.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks11.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks11.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks12.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks12.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks13.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks13.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks14.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks14.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks1.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks1.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks2.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks2.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks3.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks3.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks4.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks4.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks5.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks5.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks6.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks6.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks7.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks7.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks8.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks8.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end1.chunks9.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.end2.chunks9.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1713-Haloferax_volcanii_standing_NOMe_Rep1.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks0.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks0.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks1.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks1.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks2.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks2.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks3.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks3.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks4.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks4.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks5.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks5.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks6.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks6.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks7.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks7.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks8.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks8.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end1.chunks9.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.end2.chunks9.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1714-Haloferax_volcanii_standing_NOMe_Rep2.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks0.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks0.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks0.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks0.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks0.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks0.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks100.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks100.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks100.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks100.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks100.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks100.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks101.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks101.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks101.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks101.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks101.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks101.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks10.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks10.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks10.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks10.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks10.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks10.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks11.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks11.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks11.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks11.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks11.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks11.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks12.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks12.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks12.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks12.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks12.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks12.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks13.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks13.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks13.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks13.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks13.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks13.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks14.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks14.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks14.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks14.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks14.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks14.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks15.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks15.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks15.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks15.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks15.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks15.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks16.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks16.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks16.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks16.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks16.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks16.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks17.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks17.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks17.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks17.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks17.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks17.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks18.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks18.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks18.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks18.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks18.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks18.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks19.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks19.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks19.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks19.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks19.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks19.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks1.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks1.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks1.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks1.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks1.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks1.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks20.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks20.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks20.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks20.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks20.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks20.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks21.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks21.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks21.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks21.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks21.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks21.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks22.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks22.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks22.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks22.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks22.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks22.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks23.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks23.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks23.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks23.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks23.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks23.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks24.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks24.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks24.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks24.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks24.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks24.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks25.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks25.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks25.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks25.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks25.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks25.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks26.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks26.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks26.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks26.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks26.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks26.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks27.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks27.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks27.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks27.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks27.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks27.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks28.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks28.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks28.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks28.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks28.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks28.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks29.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks29.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks29.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks29.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks29.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks29.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks2.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks2.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks2.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks2.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks2.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks2.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks30.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks30.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks30.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks30.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks30.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks30.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks31.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks31.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks31.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks31.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks31.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks31.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks32.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks32.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks32.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks32.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks32.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks32.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks33.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks33.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks33.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks33.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks33.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks33.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks34.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks34.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks34.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks34.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks34.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks34.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks35.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks35.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks35.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks35.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks35.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks35.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks36.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks36.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks36.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks36.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks36.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks36.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks37.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks37.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks37.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks37.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks37.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks37.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks38.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks38.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks38.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks38.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks38.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks38.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks39.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks39.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks39.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks39.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks39.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks39.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks3.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks3.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks3.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks3.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks3.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks3.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks40.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks40.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks40.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks40.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks40.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks40.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks41.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks41.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks41.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks41.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks41.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks41.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks42.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks42.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks42.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks42.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks42.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks42.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks43.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks43.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks43.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks43.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks43.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks43.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks44.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks44.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks44.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks44.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks44.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks44.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks45.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks45.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks45.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks45.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks45.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks45.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks46.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks46.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks46.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks46.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks46.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks46.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks47.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks47.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks47.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks47.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks47.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks47.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks48.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks48.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks48.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks48.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks48.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks48.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks49.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks49.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks49.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks49.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks49.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks49.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks4.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks4.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks4.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks4.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks4.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks4.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks50.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks50.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks50.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks50.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks50.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks50.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks51.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks51.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks51.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks51.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks51.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks51.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks52.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks52.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks52.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks52.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks52.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks52.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks53.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks53.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks53.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks53.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks53.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks53.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks54.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks54.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks54.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks54.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks54.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks54.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks55.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks55.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks55.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks55.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks55.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks55.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks56.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks56.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks56.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks56.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks56.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks56.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks57.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks57.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks57.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks57.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks57.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks57.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks58.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks58.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks58.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks58.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks58.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks58.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks59.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks59.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks59.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks59.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks59.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks59.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks5.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks5.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks5.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks5.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks5.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks5.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks60.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks60.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks60.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks60.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks60.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks60.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks61.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks61.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks61.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks61.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks61.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks61.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks62.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks62.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks62.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks62.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks62.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks62.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks63.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks63.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks63.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks63.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks63.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks63.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks64.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks64.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks64.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks64.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks64.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks64.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks65.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks65.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks65.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks65.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks65.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks65.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks66.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks66.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks66.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks66.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks66.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks66.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks67.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks67.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks67.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks67.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks67.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks67.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks68.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks68.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks68.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks68.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks68.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks68.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks69.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks69.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks69.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks69.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks69.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks69.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks6.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks6.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks6.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks6.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks6.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks6.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks70.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks70.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks70.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks70.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks70.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks70.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks71.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks71.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks71.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks71.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks71.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks71.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks72.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks72.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks72.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks72.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks72.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks72.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks73.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks73.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks73.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks73.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks73.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks73.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks74.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks74.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks74.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks74.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks74.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks74.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks75.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks75.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks75.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks75.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks75.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks75.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks76.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks76.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks76.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks76.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks76.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks76.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks77.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks77.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks77.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks77.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks77.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks77.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks78.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks78.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks78.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks78.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks78.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks78.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks79.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks79.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks79.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks79.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks79.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks79.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks7.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks7.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks7.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks7.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks7.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks7.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks80.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks80.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks80.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks80.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks80.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks80.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks81.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks81.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks81.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks81.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks81.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks81.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks82.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks82.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks82.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks82.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks82.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks82.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks83.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks83.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks83.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks83.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks83.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks83.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks84.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks84.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks84.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks84.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks84.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks84.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks85.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks85.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks85.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks85.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks85.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks85.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks86.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks86.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks86.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks86.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks86.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks86.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks87.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks87.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks87.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks87.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks87.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks87.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks88.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks88.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks88.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks88.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks88.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks88.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks89.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks89.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks89.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks89.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks89.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks89.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks8.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks8.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks8.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks8.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks8.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks8.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks90.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks90.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks90.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks90.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks90.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks90.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks91.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks91.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks91.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks91.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks91.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks91.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks92.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks92.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks92.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks92.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks92.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks92.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks93.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks93.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks93.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks93.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks93.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks93.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks94.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks94.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks94.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks94.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks94.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks94.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks95.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks95.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks95.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks95.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks95.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks95.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks96.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks96.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks96.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks96.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks96.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks96.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks97.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks97.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks97.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks97.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks97.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks97.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks98.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks98.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks98.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks98.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks98.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks98.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks99.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks99.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks99.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks99.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks99.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks99.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end1.chunks9.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.end2.chunks9.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks9.read1.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks9.read1.unpaired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks9.read2.paired.fastq.gz L1802-Pavlovia_cf._CCMP459_gDNA.HLTMNDSXY_L4.chunks9.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &