Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1410-Dictyostelium_discoideum_Hi-C-MboI_MseI-36mers -y none -s none -p /oak/stanford/groups/akundaje/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/Dictyostelium_discoideum.dictybase.01.20.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/bwa-indexes/Dictyostelium_discoideum.dictybase.01.20.fa                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  332,617,030
 Normal Paired: 18,612,804 (5.60%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 314,004,226 (94.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 18,612,804 (5.60%)
Unique Reads: 14,471,375 (4.35%)
PCR Duplicates: 4,097,907 (1.23%)
Optical Duplicates: 43,522 (0.01%)
Library Complexity Estimate: 35,623,545
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,283,475 (1.59% / 36.51%)
Hi-C Contacts: 9,187,900 (2.76% / 63.49%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,903,764  (0.87% / 20.07%)
Intra-chromosomal: 6,284,136  (1.89% / 43.42%)
Short Range (<20Kb): 3,542,004  (1.06% / 24.48%)
Long Range (>20Kb): 2,735,571  (0.82% / 18.90%)