Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1409-Chaetoceros_gracilis_Hi-C-MboI_MseI-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-07 19:55 1.0K 
[TXT]README.md2020-03-07 19:55 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 19:25 4.7M 
[ ]coverage_wide.at.step.0.wig2020-03-08 17:04 450K 
[ ]coverage_wide.at.step.1.wig2020-03-08 19:25 448K 
[DIR]data/2020-03-07 19:55 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 17:04 6.9M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 19:25 6.8M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 17:03 359K 
[ ]depletion_score_wide.at.step.1.wig2020-03-08 19:25 346K 
[DIR]edit/2020-03-07 19:55 -  
[TXT]edits.for.step.1.txt2020-03-08 17:04 4.4M 
[TXT]edits.for.step.2.txt2020-03-08 19:25 662K 
[DIR]finalize/2020-03-07 19:55 -  
[TXT]h.edits.txt2020-03-08 22:05 8.6K 
[DIR]lift/2020-03-07 19:55 -  
[DIR]merge/2020-03-07 19:55 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 17:04 266K 
[ ]mismatch_narrow.at.step.1.bed2020-03-08 19:25 433K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 17:03 12K 
[ ]mismatch_wide.at.step.1.bed2020-03-08 19:25 4.8K 
[TXT]mismatches.at.step.0.txt2020-03-08 17:04 295K 
[TXT]mismatches.at.step.1.txt2020-03-08 19:25 193K 
[DIR]polish/2020-03-07 19:55 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 17:04 28K 
[ ]repeats_wide.at.step.1.bed2020-03-08 19:25 36K 
[TXT]run-asm-pipeline-post-review.sh2020-03-07 19:55 11K 
[TXT]run-asm-pipeline.sh2020-03-07 19:55 44K 
[DIR]scaffold/2020-03-07 19:55 -  
[ ]scaffolds.0.asm2020-03-08 16:52 4.1M 
[ ]scaffolds.0.assembly2020-03-08 16:54 33M 
[ ]scaffolds.0.cprops2020-03-07 19:56 28M 
[ ]scaffolds.0.hic2020-03-08 17:03 113M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 16:54 92M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 16:54 62M 
[ ]scaffolds.1.asm2020-03-08 19:13 4.2M 
[ ]scaffolds.1.assembly2020-03-08 19:15 34M 
[ ]scaffolds.1.cprops2020-03-08 17:34 30M 
[ ]scaffolds.1.hic2020-03-08 19:24 130M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 19:15 94M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 19:15 67M 
[ ]scaffolds.2.asm2020-03-08 20:51 4.2M 
[ ]scaffolds.2.assembly2020-03-08 20:53 35M 
[ ]scaffolds.2.cprops2020-03-08 19:46 30M 
[ ]scaffolds.2.hic2020-03-08 21:03 132M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 20:53 96M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 20:53 68M 
[ ]scaffolds.FINAL.assembly2020-03-09 00:28 35M 
[ ]scaffolds.FINAL.fasta2020-03-09 00:28 601M 
[ ]scaffolds.FINAL.hic2020-03-09 00:42 140M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-09 00:32 95M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-09 00:32 68M 
[ ]scaffolds.cprops2020-03-07 19:56 28M 
[TXT]scaffolds.edits.txt2020-03-08 19:46 5.4M 
[ ]scaffolds.final.asm2020-03-08 22:23 4.2M 
[ ]scaffolds.final.assembly2020-03-08 22:28 34M 
[ ]scaffolds.final.cprops2020-03-08 22:21 30M 
[ ]scaffolds.final.fasta2020-03-08 22:39 606M 
[ ]scaffolds.final.hic2020-03-08 22:38 139M 
[TXT]scaffolds.mnd.txt2020-03-07 13:51 19G 
[ ]scaffolds.polished.asm2020-03-08 21:32 4.2M 
[ ]scaffolds.polished.cprops2020-03-08 21:26 30M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 21:04 6.9M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 21:03 103K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 21:04 44K 
[ ]scaffolds.polished.hic2020-03-08 21:44 132M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 21:04 171K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 21:03 164  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 21:04 14K 
[ ]scaffolds.polished.split.assembly2020-03-08 22:10 35M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 21:45 6.9M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 21:44 103K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 21:45 7.0K 
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 21:45 173K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 21:44 162  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 21:45 8.9K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 21:45 16K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 21:04 58K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 21:34 96M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 21:34 69M 
[ ]scaffolds.rawchrom.asm2020-03-08 22:23 4.2M 
[ ]scaffolds.rawchrom.assembly2020-03-08 22:28 34M 
[ ]scaffolds.rawchrom.cprops2020-03-08 22:21 30M 
[ ]scaffolds.rawchrom.fasta2020-03-08 22:39 606M 
[ ]scaffolds.rawchrom.hic2020-03-08 22:38 139M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 22:28 95M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 22:28 68M 
[ ]scaffolds.resolved.asm2020-03-08 20:51 4.2M 
[ ]scaffolds.resolved.cprops2020-03-08 19:46 30M 
[ ]scaffolds.resolved.hic2020-03-08 21:03 132M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 21:34 35M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 20:53 96M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 20:53 68M 
[ ]scaffolds.split.asm2020-03-08 22:08 4.2M 
[ ]scaffolds.split.assembly2020-03-08 22:20 35M 
[ ]scaffolds.split.cprops2020-03-08 22:05 30M 
[ ]scaffolds.split.hic2020-03-08 22:20 132M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 22:10 96M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 22:10 69M 
[DIR]seal/2020-03-07 19:55 -  
[DIR]split/2020-03-07 19:55 -  
[DIR]split_chrom_aware/2020-03-07 19:55 -  
[DIR]supp/2020-03-07 19:55 -  
[ ]suspect.at.step.0.bed2020-03-08 17:04 231K 
[ ]suspect.at.step.1.bed2020-03-08 19:25 154K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 17:04 4.7M 
[TXT]suspect_2D.at.step.1.txt2020-03-08 19:25 856K 
[DIR]utils/2020-03-07 19:55 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-07 19:55 382  
[ ]zL1464-3D.1.err2020-03-09 00:31 6.7K 
[ ]zL1464-3D.1.out2020-03-09 00:42 71K 
[ ]zL1464-3D.1.sbatch2020-03-07 19:55 586  
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