Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1408-Cyclotella_meninghiana_Hi-C-MboI_MseI-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 13:20 1.0K 
[TXT]README.md2020-03-08 13:20 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-09 00:01 3.4M 
[ ]coverage_wide.at.step.0.wig2020-03-08 22:05 224K 
[ ]coverage_wide.at.step.1.wig2020-03-09 00:01 225K 
[DIR]data/2020-03-08 13:20 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 22:05 3.5M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-09 00:01 3.4M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 22:04 192K 
[ ]depletion_score_wide.at.step.1.wig2020-03-09 00:00 187K 
[DIR]edit/2020-03-08 13:20 -  
[TXT]edits.for.step.1.txt2020-03-08 22:05 3.2M 
[TXT]edits.for.step.2.txt2020-03-09 00:01 411K 
[DIR]finalize/2020-03-08 13:20 -  
[TXT]h.edits.txt2020-03-09 02:23 3.8K 
[DIR]lift/2020-03-08 13:20 -  
[DIR]merge/2020-03-08 13:20 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 22:05 207K 
[ ]mismatch_narrow.at.step.1.bed2020-03-09 00:01 361K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 22:04 4.4K 
[ ]mismatch_wide.at.step.1.bed2020-03-09 00:00 4.1K 
[TXT]mismatches.at.step.0.txt2020-03-08 22:05 354K 
[TXT]mismatches.at.step.1.txt2020-03-09 00:01 237K 
[DIR]polish/2020-03-08 13:20 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 22:05 40K 
[ ]repeats_wide.at.step.1.bed2020-03-09 00:01 29K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 13:20 11K 
[TXT]run-asm-pipeline.sh2020-03-08 13:20 44K 
[DIR]scaffold/2020-03-08 13:20 -  
[ ]scaffolds.0.asm2020-03-08 21:53 1.5M 
[ ]scaffolds.0.assembly2020-03-08 21:54 13M 
[ ]scaffolds.0.cprops2020-03-08 13:21 11M 
[ ]scaffolds.0.hic2020-03-08 22:03 92M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 21:54 35M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 21:54 22M 
[ ]scaffolds.1.asm2020-03-08 23:50 1.6M 
[ ]scaffolds.1.assembly2020-03-08 23:51 13M 
[ ]scaffolds.1.cprops2020-03-08 22:18 12M 
[ ]scaffolds.1.hic2020-03-09 00:00 97M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 23:51 37M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 23:51 25M 
[ ]scaffolds.2.asm2020-03-09 01:44 1.6M 
[ ]scaffolds.2.assembly2020-03-09 01:45 14M 
[ ]scaffolds.2.cprops2020-03-09 00:07 12M 
[ ]scaffolds.2.hic2020-03-09 01:53 98M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-09 01:45 37M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-09 01:45 26M 
[ ]scaffolds.FINAL.assembly2020-03-09 03:02 13M 
[ ]scaffolds.FINAL.fasta2020-03-09 03:02 306M 
[ ]scaffolds.FINAL.hic2020-03-09 03:14 100M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-09 03:05 37M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-09 03:05 25M 
[ ]scaffolds.cprops2020-03-08 13:21 11M 
[TXT]scaffolds.edits.txt2020-03-09 00:07 3.7M 
[ ]scaffolds.final.asm2020-03-09 02:36 1.6M 
[ ]scaffolds.final.assembly2020-03-09 02:39 13M 
[ ]scaffolds.final.cprops2020-03-09 02:35 12M 
[ ]scaffolds.final.fasta2020-03-09 02:47 304M 
[ ]scaffolds.final.hic2020-03-09 02:47 99M 
[TXT]scaffolds.mnd.txt2020-03-08 08:51 28G 
[ ]scaffolds.polished.asm2020-03-09 02:05 1.6M 
[ ]scaffolds.polished.cprops2020-03-09 02:01 12M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-09 01:54 3.5M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-09 01:53 51K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-09 01:55 67K 
[ ]scaffolds.polished.hic2020-03-09 02:15 98M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-09 01:54 164K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-09 01:53 216  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-09 01:55 52K 
[ ]scaffolds.polished.split.assembly2020-03-09 02:26 14M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-09 02:16 3.5M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-09 02:15 51K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-09 02:16 3.3K 
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-09 02:16 164K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-09 02:15 187  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-09 02:16 6.1K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-09 02:16 9.4K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-09 01:55 119K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-09 02:06 37M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-09 02:06 26M 
[ ]scaffolds.rawchrom.asm2020-03-09 02:36 1.6M 
[ ]scaffolds.rawchrom.assembly2020-03-09 02:39 13M 
[ ]scaffolds.rawchrom.cprops2020-03-09 02:35 12M 
[ ]scaffolds.rawchrom.fasta2020-03-09 02:47 304M 
[ ]scaffolds.rawchrom.hic2020-03-09 02:47 99M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-09 02:39 37M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-09 02:39 25M 
[ ]scaffolds.resolved.asm2020-03-09 01:44 1.6M 
[ ]scaffolds.resolved.cprops2020-03-09 00:07 12M 
[ ]scaffolds.resolved.hic2020-03-09 01:53 98M 
[ ]scaffolds.resolved.polish.assembly2020-03-09 02:06 14M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-09 01:45 37M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-09 01:45 26M 
[ ]scaffolds.split.asm2020-03-09 02:25 1.6M 
[ ]scaffolds.split.assembly2020-03-09 02:35 14M 
[ ]scaffolds.split.cprops2020-03-09 02:23 12M 
[ ]scaffolds.split.hic2020-03-09 02:35 98M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-09 02:26 37M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-09 02:26 26M 
[DIR]seal/2020-03-08 13:20 -  
[DIR]split/2020-03-08 13:20 -  
[DIR]split_chrom_aware/2020-03-08 13:20 -  
[DIR]supp/2020-03-08 13:20 -  
[ ]suspect.at.step.0.bed2020-03-08 22:05 139K 
[ ]suspect.at.step.1.bed2020-03-09 00:01 127K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 22:05 3.6M 
[TXT]suspect_2D.at.step.1.txt2020-03-09 00:01 648K 
[DIR]utils/2020-03-08 13:20 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-08 13:21 388  
[ ]zL1408-3D.1.err2020-03-09 03:04 9.7K 
[ ]zL1408-3D.1.out2020-03-09 03:14 52K 
[ ]zL1408-3D.1.sbatch2020-03-08 13:21 592  
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