Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1407-Dictyota_dichotoma_Hi-C-MboI_MseI-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 05:40 1.0K 
[TXT]README.md2020-03-08 05:40 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-09 01:51 2.6M 
[ ]coverage_wide.at.step.0.wig2020-03-08 23:32 517K 
[ ]coverage_wide.at.step.1.wig2020-03-09 01:51 516K 
[DIR]data/2020-03-08 05:40 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 23:32 7.9M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-09 01:51 7.9M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 23:31 404K 
[ ]depletion_score_wide.at.step.1.wig2020-03-09 01:50 392K 
[DIR]edit/2020-03-08 05:40 -  
[TXT]edits.for.step.1.txt2020-03-08 23:32 2.3M 
[TXT]edits.for.step.2.txt2020-03-09 01:51 754K 
[DIR]finalize/2020-03-08 05:40 -  
[TXT]h.edits.txt2020-03-09 04:39 10K 
[DIR]lift/2020-03-08 05:40 -  
[DIR]merge/2020-03-08 05:40 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 23:32 280K 
[ ]mismatch_narrow.at.step.1.bed2020-03-09 01:51 235K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 23:31 10K 
[ ]mismatch_wide.at.step.1.bed2020-03-09 01:50 10K 
[TXT]mismatches.at.step.0.txt2020-03-08 23:32 401K 
[TXT]mismatches.at.step.1.txt2020-03-09 01:51 304K 
[DIR]polish/2020-03-08 05:40 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 23:32 12K 
[ ]repeats_wide.at.step.1.bed2020-03-09 01:51 30K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 05:40 11K 
[TXT]run-asm-pipeline.sh2020-03-08 05:40 44K 
[DIR]scaffold/2020-03-08 05:40 -  
[ ]scaffolds.0.asm2020-03-08 23:17 5.5M 
[ ]scaffolds.0.assembly2020-03-08 23:20 44M 
[ ]scaffolds.0.cprops2020-03-08 05:41 37M 
[ ]scaffolds.0.hic2020-03-08 23:31 127M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 23:20 121M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 23:20 85M 
[ ]scaffolds.1.asm2020-03-09 01:38 5.6M 
[ ]scaffolds.1.assembly2020-03-09 01:39 45M 
[ ]scaffolds.1.cprops2020-03-08 23:42 38M 
[ ]scaffolds.1.hic2020-03-09 01:50 137M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-09 01:39 124M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-09 01:39 88M 
[ ]scaffolds.2.asm2020-03-09 03:50 5.6M 
[ ]scaffolds.2.assembly2020-03-09 03:52 45M 
[ ]scaffolds.2.cprops2020-03-09 01:58 39M 
[ ]scaffolds.2.hic2020-03-09 04:02 138M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-09 03:52 125M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-09 03:52 89M 
[ ]scaffolds.FINAL.assembly2020-03-09 06:49 45M 
[ ]scaffolds.FINAL.fasta2020-03-09 06:49 699M 
[ ]scaffolds.FINAL.hic2020-03-09 07:04 142M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-09 06:53 124M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-09 06:53 89M 
[ ]scaffolds.cprops2020-03-08 05:41 37M 
[TXT]scaffolds.edits.txt2020-03-09 01:58 3.4M 
[ ]scaffolds.final.asm2020-03-09 05:00 5.6M 
[ ]scaffolds.final.assembly2020-03-09 05:04 45M 
[ ]scaffolds.final.cprops2020-03-09 04:55 38M 
[ ]scaffolds.final.fasta2020-03-09 05:15 702M 
[ ]scaffolds.final.hic2020-03-09 05:15 141M 
[TXT]scaffolds.mnd.txt2020-03-07 21:04 29G 
[ ]scaffolds.polished.asm2020-03-09 04:19 5.6M 
[ ]scaffolds.polished.cprops2020-03-09 04:11 39M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-09 04:04 8.1M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-09 04:02 119K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-09 04:04 55K 
[ ]scaffolds.polished.hic2020-03-09 04:31 138M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-09 04:04 92K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-09 04:02 297  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-09 04:04 26K 
[ ]scaffolds.polished.split.assembly2020-03-09 04:44 45M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-09 04:33 8.1M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-09 04:31 119K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-09 04:33 9.2K 
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-09 04:33 93K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-09 04:31 296  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-09 04:33 15K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-09 04:33 24K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-09 04:04 81K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-09 04:21 125M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-09 04:21 90M 
[ ]scaffolds.rawchrom.asm2020-03-09 05:00 5.6M 
[ ]scaffolds.rawchrom.assembly2020-03-09 05:04 45M 
[ ]scaffolds.rawchrom.cprops2020-03-09 04:55 38M 
[ ]scaffolds.rawchrom.fasta2020-03-09 05:15 702M 
[ ]scaffolds.rawchrom.hic2020-03-09 05:15 141M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-09 05:04 124M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-09 05:04 89M 
[ ]scaffolds.resolved.asm2020-03-09 03:50 5.6M 
[ ]scaffolds.resolved.cprops2020-03-09 01:58 39M 
[ ]scaffolds.resolved.hic2020-03-09 04:02 138M 
[ ]scaffolds.resolved.polish.assembly2020-03-09 04:21 45M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-09 03:52 125M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-09 03:52 89M 
[ ]scaffolds.split.asm2020-03-09 04:43 5.6M 
[ ]scaffolds.split.assembly2020-03-09 04:55 45M 
[ ]scaffolds.split.cprops2020-03-09 04:39 39M 
[ ]scaffolds.split.hic2020-03-09 04:55 138M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-09 04:44 125M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-09 04:44 90M 
[DIR]seal/2020-03-08 05:40 -  
[DIR]split/2020-03-08 05:40 -  
[DIR]split_chrom_aware/2020-03-08 05:40 -  
[DIR]supp/2020-03-08 05:40 -  
[ ]suspect.at.step.0.bed2020-03-08 23:32 246K 
[ ]suspect.at.step.1.bed2020-03-09 01:51 185K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 23:32 2.7M 
[TXT]suspect_2D.at.step.1.txt2020-03-09 01:51 1.0M 
[DIR]utils/2020-03-08 05:40 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-08 05:40 376  
[ ]zL1407-3D.1.err2020-03-09 06:51 10K 
[ ]zL1407-3D.1.out2020-03-09 07:04 68K 
[ ]zL1407-3D.1.sbatch2020-03-08 05:40 580  
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