Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1406-Sphacelaria_sp_Hi-C-MboI_MseI-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-07 19:54 1.0K 
[TXT]README.md2020-03-07 19:54 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 15:34 2.5M 
[ ]coverage_wide.at.step.0.wig2020-03-08 12:13 404K 
[ ]coverage_wide.at.step.1.wig2020-03-08 15:34 404K 
[DIR]data/2020-03-07 19:54 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 12:13 6.2M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 15:34 6.2M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 12:12 331K 
[ ]depletion_score_wide.at.step.1.wig2020-03-08 15:33 315K 
[DIR]edit/2020-03-07 19:54 -  
[TXT]edits.for.step.1.txt2020-03-08 12:13 2.2M 
[TXT]edits.for.step.2.txt2020-03-08 15:34 1.0M 
[DIR]finalize/2020-03-07 19:54 -  
[TXT]h.edits.txt2020-03-08 19:09 3.7K 
[DIR]lift/2020-03-07 19:54 -  
[DIR]merge/2020-03-07 19:54 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 12:13 365K 
[ ]mismatch_narrow.at.step.1.bed2020-03-08 15:34 281K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 12:12 4.8K 
[ ]mismatch_wide.at.step.1.bed2020-03-08 15:33 3.9K 
[TXT]mismatches.at.step.0.txt2020-03-08 12:13 672K 
[TXT]mismatches.at.step.1.txt2020-03-08 15:34 435K 
[DIR]polish/2020-03-07 19:54 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 12:13 5.7K 
[ ]repeats_wide.at.step.1.bed2020-03-08 15:34 16K 
[TXT]run-asm-pipeline-post-review.sh2020-03-07 19:54 11K 
[TXT]run-asm-pipeline.sh2020-03-07 19:54 44K 
[DIR]scaffold/2020-03-07 19:54 -  
[ ]scaffolds.0.asm2020-03-08 11:59 2.4M 
[ ]scaffolds.0.assembly2020-03-08 12:02 19M 
[ ]scaffolds.0.cprops2020-03-07 19:55 16M 
[ ]scaffolds.0.hic2020-03-08 12:12 88M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 12:02 54M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 12:02 35M 
[ ]scaffolds.1.asm2020-03-08 15:20 2.5M 
[ ]scaffolds.1.assembly2020-03-08 15:22 21M 
[ ]scaffolds.1.cprops2020-03-08 12:30 18M 
[ ]scaffolds.1.hic2020-03-08 15:33 96M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 15:22 57M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 15:22 38M 
[ ]scaffolds.2.asm2020-03-08 18:04 2.5M 
[ ]scaffolds.2.assembly2020-03-08 18:06 21M 
[ ]scaffolds.2.cprops2020-03-08 15:47 18M 
[ ]scaffolds.2.hic2020-03-08 18:19 97M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 18:06 58M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 18:06 40M 
[ ]scaffolds.FINAL.assembly2020-03-08 20:39 21M 
[ ]scaffolds.FINAL.fasta2020-03-08 20:39 540M 
[ ]scaffolds.FINAL.hic2020-03-08 20:57 101M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-08 20:45 56M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-08 20:45 39M 
[ ]scaffolds.cprops2020-03-07 19:55 16M 
[TXT]scaffolds.edits.txt2020-03-08 15:47 3.5M 
[ ]scaffolds.final.asm2020-03-08 19:30 2.5M 
[ ]scaffolds.final.assembly2020-03-08 19:37 21M 
[ ]scaffolds.final.cprops2020-03-08 19:29 18M 
[ ]scaffolds.final.fasta2020-03-08 19:50 537M 
[ ]scaffolds.final.hic2020-03-08 19:50 99M 
[TXT]scaffolds.mnd.txt2020-03-07 17:20 36G 
[ ]scaffolds.polished.asm2020-03-08 18:41 2.5M 
[ ]scaffolds.polished.cprops2020-03-08 18:31 18M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 18:21 6.3M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 18:20 92K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 18:21 123K 
[ ]scaffolds.polished.hic2020-03-08 18:56 97M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 18:21 104K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 18:20 189  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 18:21 71K 
[ ]scaffolds.polished.split.assembly2020-03-08 19:16 21M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 18:58 6.3M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 18:57 92K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 18:58 3.2K 
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 18:58 105K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 18:57 188  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 18:58 5.4K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 18:58 8.5K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 18:21 193K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 18:43 58M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 18:43 40M 
[ ]scaffolds.rawchrom.asm2020-03-08 19:30 2.5M 
[ ]scaffolds.rawchrom.assembly2020-03-08 19:37 21M 
[ ]scaffolds.rawchrom.cprops2020-03-08 19:29 18M 
[ ]scaffolds.rawchrom.fasta2020-03-08 19:50 537M 
[ ]scaffolds.rawchrom.hic2020-03-08 19:50 99M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 19:37 56M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 19:37 39M 
[ ]scaffolds.resolved.asm2020-03-08 18:04 2.5M 
[ ]scaffolds.resolved.cprops2020-03-08 15:47 18M 
[ ]scaffolds.resolved.hic2020-03-08 18:19 97M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 18:43 21M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 18:06 58M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 18:06 40M 
[ ]scaffolds.split.asm2020-03-08 19:14 2.5M 
[ ]scaffolds.split.assembly2020-03-08 19:29 21M 
[ ]scaffolds.split.cprops2020-03-08 19:09 18M 
[ ]scaffolds.split.hic2020-03-08 19:29 97M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 19:16 58M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 19:16 40M 
[DIR]seal/2020-03-07 19:54 -  
[DIR]split/2020-03-07 19:54 -  
[DIR]split_chrom_aware/2020-03-07 19:54 -  
[DIR]supp/2020-03-07 19:54 -  
[ ]suspect.at.step.0.bed2020-03-08 12:13 323K 
[ ]suspect.at.step.1.bed2020-03-08 15:34 220K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 12:13 2.9M 
[TXT]suspect_2D.at.step.1.txt2020-03-08 15:34 1.4M 
[DIR]utils/2020-03-07 19:54 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-07 19:54 364  
[ ]zL1464-3D.1.err2020-03-08 20:43 12K 
[ ]zL1464-3D.1.out2020-03-08 20:57 60K 
[ ]zL1464-3D.1.sbatch2020-03-07 19:54 568  
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