Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1405-Navicula_sp_Hi-C-MboI_MseI-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 05:39 1.0K 
[TXT]README.md2020-03-08 05:39 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 18:29 1.9M 
[ ]coverage_wide.at.step.0.wig2020-03-08 14:42 305K 
[ ]coverage_wide.at.step.1.wig2020-03-08 18:29 305K 
[DIR]data/2020-03-08 05:39 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 14:42 4.7M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 18:29 4.7M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 14:42 257K 
[ ]depletion_score_wide.at.step.1.wig2020-03-08 18:28 248K 
[DIR]edit/2020-03-08 05:39 -  
[TXT]edits.for.step.1.txt2020-03-08 14:43 1.7M 
[TXT]edits.for.step.2.txt2020-03-08 18:29 747K 
[DIR]finalize/2020-03-08 05:39 -  
[TXT]h.edits.txt2020-03-08 22:44 3.5K 
[DIR]lift/2020-03-08 05:39 -  
[DIR]merge/2020-03-08 05:39 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 14:42 223K 
[ ]mismatch_narrow.at.step.1.bed2020-03-08 18:29 261K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 14:42 7.3K 
[ ]mismatch_wide.at.step.1.bed2020-03-08 18:28 6.7K 
[TXT]mismatches.at.step.0.txt2020-03-08 14:43 362K 
[TXT]mismatches.at.step.1.txt2020-03-08 18:29 309K 
[DIR]polish/2020-03-08 05:39 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 14:42 11K 
[ ]repeats_wide.at.step.1.bed2020-03-08 18:29 28K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 05:39 11K 
[TXT]run-asm-pipeline.sh2020-03-08 05:39 44K 
[DIR]scaffold/2020-03-08 05:39 -  
[ ]scaffolds.0.asm2020-03-08 14:29 1.8M 
[ ]scaffolds.0.assembly2020-03-08 14:32 15M 
[ ]scaffolds.0.cprops2020-03-08 05:41 13M 
[ ]scaffolds.0.hic2020-03-08 14:42 77M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 14:32 41M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 14:32 27M 
[ ]scaffolds.1.asm2020-03-08 18:16 1.9M 
[ ]scaffolds.1.assembly2020-03-08 18:18 16M 
[ ]scaffolds.1.cprops2020-03-08 14:52 13M 
[ ]scaffolds.1.hic2020-03-08 18:28 86M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 18:18 43M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 18:18 29M 
[ ]scaffolds.2.asm2020-03-08 22:03 1.9M 
[ ]scaffolds.2.assembly2020-03-08 22:05 16M 
[ ]scaffolds.2.cprops2020-03-08 18:34 14M 
[ ]scaffolds.2.hic2020-03-08 22:15 88M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 22:05 44M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 22:05 30M 
[ ]scaffolds.FINAL.assembly2020-03-08 23:35 16M 
[ ]scaffolds.FINAL.fasta2020-03-08 23:35 410M 
[ ]scaffolds.FINAL.hic2020-03-08 23:50 90M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-08 23:40 43M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-08 23:40 30M 
[ ]scaffolds.cprops2020-03-08 05:41 13M 
[TXT]scaffolds.edits.txt2020-03-08 18:34 2.7M 
[ ]scaffolds.final.asm2020-03-08 22:59 1.9M 
[ ]scaffolds.final.assembly2020-03-08 23:04 16M 
[ ]scaffolds.final.cprops2020-03-08 22:59 13M 
[ ]scaffolds.final.fasta2020-03-08 23:14 406M 
[ ]scaffolds.final.hic2020-03-08 23:13 89M 
[TXT]scaffolds.mnd.txt2020-03-07 23:21 34G 
[ ]scaffolds.polished.asm2020-03-08 22:26 1.9M 
[ ]scaffolds.polished.cprops2020-03-08 22:21 14M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 22:16 4.8M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 22:15 69K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 22:16 101K 
[ ]scaffolds.polished.hic2020-03-08 22:38 88M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 22:16 106K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 22:15 110  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 22:16 57K 
[ ]scaffolds.polished.split.assembly2020-03-08 22:49 16M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 22:40 4.8M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 22:39 70K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 22:40 2.9K 
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 22:40 106K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 22:39 110  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 22:40 3.1K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 22:40 5.9K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 22:16 158K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 22:28 44M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 22:28 30M 
[ ]scaffolds.rawchrom.asm2020-03-08 22:59 1.9M 
[ ]scaffolds.rawchrom.assembly2020-03-08 23:04 16M 
[ ]scaffolds.rawchrom.cprops2020-03-08 22:59 13M 
[ ]scaffolds.rawchrom.fasta2020-03-08 23:14 406M 
[ ]scaffolds.rawchrom.hic2020-03-08 23:13 89M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 23:04 43M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 23:04 30M 
[ ]scaffolds.resolved.asm2020-03-08 22:03 1.9M 
[ ]scaffolds.resolved.cprops2020-03-08 18:34 14M 
[ ]scaffolds.resolved.hic2020-03-08 22:15 88M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 22:28 16M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 22:05 44M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 22:05 30M 
[ ]scaffolds.split.asm2020-03-08 22:47 1.9M 
[ ]scaffolds.split.assembly2020-03-08 22:59 16M 
[ ]scaffolds.split.cprops2020-03-08 22:44 14M 
[ ]scaffolds.split.hic2020-03-08 22:59 88M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 22:49 44M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 22:49 30M 
[DIR]seal/2020-03-08 05:39 -  
[DIR]split/2020-03-08 05:39 -  
[DIR]split_chrom_aware/2020-03-08 05:39 -  
[DIR]supp/2020-03-08 05:39 -  
[ ]suspect.at.step.0.bed2020-03-08 14:42 200K 
[ ]suspect.at.step.1.bed2020-03-08 18:29 173K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 14:43 2.1M 
[TXT]suspect_2D.at.step.1.txt2020-03-08 18:29 1.0M 
[DIR]utils/2020-03-08 05:39 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-08 05:39 355  
[ ]zL1405-3D.1.err2020-03-08 23:38 12K 
[ ]zL1405-3D.1.out2020-03-08 23:50 60K 
[ ]zL1405-3D.1.sbatch2020-03-08 05:39 559  
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