#	999a_HIC-GSM1379427	999b_HIC-GSM1379428	Laublab_BglII_HiC_NA1000_swarmer_cell_untreated_replicate1-GSM1120445-SRR824843	Laublab_BglII_HiC_NA1000_swarmer_cell_untreated_replicate2-GSM1120446-SRR824844	Laublab_NcoI_HiC_NA1000_swarmer_cell_untreated-GSM1120448-SRR824846
Sequenced Read Pairs	39,508,078	39,489,046	12,605,039	14,744,189	17,431,413
Normal Paired	31,965,585 (80.91%)	22,551,336 (57.11%)	10,981,085 (87.12%)	12,569,553 (85.25%)	15,008,986 (86.10%)
Chimeric Paired	6,994,016 (17.70%)	15,743,547 (39.87%)	0 (0.00%)	0 (0.00%)	0 (0.00%)
Chimeric Ambiguous	499,559 (1.26%)	1,109,096 (2.81%)	0 (0.00%)	0 (0.00%)	0 (0.00%)
Unmapped	48,918 (0.12%)	85,067 (0.22%)	1,623,954 (12.88%)	2,174,636 (14.75%)	2,422,427 (13.90%)
Ligation Motif Present	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)
Alignable (Normal+Chimeric Paired)	38,959,601 (98.61%)	38,294,883 (96.98%)	10,981,085 (87.12%)	12,569,553 (85.25%)	15,008,986 (86.10%)
Unique Reads	21,658,784 (54.82%)	25,047,773 (63.43%)	6,684,538 (53.03%)	7,159,497 (48.56%)	10,455,126 (59.98%)
PCR Duplicates	17,300,817 (43.79%)	13,247,110 (33.55%)	4,296,547 (34.09%)	5,410,056 (36.69%)	4,553,860 (26.12%)
Optical Duplicates	0 (0.00%)	0 (0.00%)	0 (0.00%)	0 (0.00%)	0 (0.00%)
Library Complexity Estimate	29,589,634	41,672,622	10,065,395	10,013,107	19,426,280
Intra-fragment Reads	0 (0.00% / 0.00%)	0 (0.00% / 0.00%)	0 (0.00% / 0.00%)	0 (0.00% / 0.00%)	0 (0.00% / 0.00%)
Hi-C Contacts	20,549,055 (52.01% / 94.88%)	23,652,882 (59.90% / 94.43%)	6,543,156 (51.91% / 97.88%)	7,007,950 (47.53% / 97.88%)	10,210,169 (58.57% / 97.66%)
Hi-C Contacts Ligation Motif Present	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)
Hi-C Contacts 3p Bias (Long Range)	0% - 0%	0% - 0%	0% - 0%	0% - 0%	0% - 0%
Hi-C Contacts Pair Type (L-I-O-R)	25% - 25% - 25% - 25%	25% - 25% - 25% - 25%	25% - 25% - 25% - 25%	25% - 25% - 25% - 25%	25% - 25% - 25% - 25%
Inter-chromosomal	1,745,719  (4.42% / 8.06%)	2,126,945  (5.39% / 8.49%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)	0  (0.00% / 0.00%)
Intra-chromosomal	18,803,336  (47.59% / 86.82%)	21,525,937  (54.51% / 85.94%)	6,543,156  (51.91% / 97.88%)	7,007,950  (47.53% / 97.88%)	10,210,169  (58.57% / 97.66%)
Short Range (<20Kb)	14,065,543  (35.60% / 64.94%)	15,814,997  (40.05% / 63.14%)	1,955,304  (15.51% / 29.25%)	1,694,193  (11.49% / 23.66%)	2,627,363  (15.07% / 25.13%)
Long Range (>20Kb)	4,728,250  (11.97% / 21.83%)	5,700,536  (14.44% / 22.76%)	4,587,511  (36.39% / 68.63%)	5,313,084  (36.04% / 74.21%)	7,579,389  (43.48% / 72.49%)