#!/bin/bash
#
# Copyright (c) 2015 Aiden Lab
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
# 
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
# 
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
# Juicer 1.5
if [ "$CALLEDBY" = "AWS" ]
then
    echo "AWS"
    java -Djava.io.tmpdir=/opt/juicer/tmp -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64  -Xmx32000m -Xms8000m -jar `dirname $0`/juicer_tools.7.0.jar $*
elif [ "$CALLEDBY" = "UGER" ]
then
    echo "UGER"
    java -Djava.awt.headless=true  -Xmx16000m  -jar `dirname $0`/juicer_tools.7.5.jar  $*
elif [ "$CALLEDBY" = "SLURM" ]
then
    echo "SLURM"
    java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicer_tools.7.5.jar $*
elif [ "$CALLEDBY" = "LSF" ] 
then
    java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicer_tools.7.0.jar $*
else # default, don't use temp directory or gpus, use CUDA 7.0
    java -Djava.awt.headless=true  -Xmx16000m  -jar `dirname $0`/juicer_tools.jar  $*
fi