Index of /kundaje/marinovg/oak/various/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1199-Chlorella_sp._Hi-C-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 06:01 1.0K 
[TXT]README.md2020-03-08 06:01 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 21:25 832K 
[DIR]bwameth-indexes/2025-11-16 10:25 -  
[ ]coverage_wide.at.step.0.wig2020-03-08 20:12 243K 
[ ]coverage_wide.at.step.1.wig2020-03-08 21:25 243K 
[DIR]data/2020-03-08 06:01 -  
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 20:12 3.7M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 21:25 3.7M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 20:11 194K 
[ ]depletion_score_wide.at.step.1.wig2020-03-08 21:23 190K 
[DIR]edit/2020-03-08 06:01 -  
[TXT]edits.for.step.1.txt2020-03-08 20:12 757K 
[TXT]edits.for.step.2.txt2020-03-08 21:25 183K 
[DIR]finalize/2020-03-08 06:01 -  
[TXT]h.edits.txt2020-03-08 22:48 781  
[DIR]lift/2020-03-08 06:01 -  
[DIR]merge/2020-03-08 06:01 -  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 20:12 71K 
[ ]mismatch_narrow.at.step.1.bed2020-03-08 21:25 88K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 20:11 8.8K 
[ ]mismatch_wide.at.step.1.bed2020-03-08 21:23 7.7K 
[TXT]mismatches.at.step.0.txt2020-03-08 20:12 111K 
[TXT]mismatches.at.step.1.txt2020-03-08 21:25 72K 
[DIR]polish/2020-03-08 06:01 -  
[ ]repeats_wide.at.step.0.bed2020-03-08 20:12 3.7K 
[ ]repeats_wide.at.step.1.bed2020-03-08 21:25 9.6K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 06:01 11K 
[TXT]run-asm-pipeline.sh2020-03-08 06:01 44K 
[DIR]scaffold/2020-03-08 06:01 -  
[ ]scaffolds.0.asm2020-03-08 19:57 1.6M 
[ ]scaffolds.0.assembly2020-03-08 19:58 13M 
[ ]scaffolds.0.cprops2020-03-08 06:02 11M 
[ ]scaffolds.0.hic2020-03-08 20:11 85M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 19:58 38M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 19:58 26M 
[ ]scaffolds.1.asm2020-03-08 21:10 1.7M 
[ ]scaffolds.1.assembly2020-03-08 21:12 14M 
[ ]scaffolds.1.cprops2020-03-08 20:14 12M 
[ ]scaffolds.1.hic2020-03-08 21:23 92M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 21:12 38M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 21:12 27M 
[ ]scaffolds.2.asm2020-03-08 22:09 1.7M 
[ ]scaffolds.2.assembly2020-03-08 22:10 14M 
[ ]scaffolds.2.cprops2020-03-08 21:26 12M 
[ ]scaffolds.2.hic2020-03-08 22:22 93M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 22:10 38M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 22:10 27M 
[ ]scaffolds.FINAL.assembly2020-03-08 23:40 14M 
[ ]scaffolds.FINAL.chrom.sizes2025-11-16 11:44 5.6M 
[ ]scaffolds.FINAL.fasta2020-03-08 23:40 323M 
[ ]scaffolds.FINAL.fasta.fai2025-11-16 11:48 9.5M 
[ ]scaffolds.FINAL.hic2020-03-08 23:55 94M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-08 23:44 38M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-08 23:44 27M 
[ ]scaffolds.cprops2020-03-08 06:02 11M 
[TXT]scaffolds.edits.txt2020-03-08 21:26 1.0M 
[ ]scaffolds.final.asm2020-03-08 23:04 1.7M 
[ ]scaffolds.final.assembly2020-03-08 23:07 14M 
[ ]scaffolds.final.cprops2020-03-08 23:04 12M 
[ ]scaffolds.final.fasta2020-03-08 23:19 322M 
[ ]scaffolds.final.hic2020-03-08 23:19 94M 
[TXT]scaffolds.mnd.txt2020-03-07 22:41 15G 
[ ]scaffolds.polished.asm2020-03-08 22:30 1.7M 
[ ]scaffolds.polished.cprops2020-03-08 22:26 12M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 22:25 3.8M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 22:23 54K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 22:25 7.2K 
[ ]scaffolds.polished.hic2020-03-08 22:44 93M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 22:25 36K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 22:23 322  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 22:25 6.6K 
[ ]scaffolds.polished.split.assembly2020-03-08 22:52 14M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 22:47 3.8M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 22:45 54K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 22:47 689  
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 22:47 36K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 22:45 323  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 22:47 3.0K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 22:47 3.7K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 22:25 14K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 22:32 38M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 22:32 27M 
[ ]scaffolds.rawchrom.asm2020-03-08 23:04 1.7M 
[ ]scaffolds.rawchrom.assembly2020-03-08 23:07 14M 
[ ]scaffolds.rawchrom.cprops2020-03-08 23:04 12M 
[ ]scaffolds.rawchrom.fasta2020-03-08 23:19 322M 
[ ]scaffolds.rawchrom.hic2020-03-08 23:19 94M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 23:07 38M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 23:07 27M 
[ ]scaffolds.resolved.asm2020-03-08 22:09 1.7M 
[ ]scaffolds.resolved.cprops2020-03-08 21:26 12M 
[ ]scaffolds.resolved.hic2020-03-08 22:22 93M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 22:32 14M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 22:10 38M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 22:10 27M 
[ ]scaffolds.split.asm2020-03-08 22:50 1.7M 
[ ]scaffolds.split.assembly2020-03-08 23:04 14M 
[ ]scaffolds.split.cprops2020-03-08 22:48 12M 
[ ]scaffolds.split.hic2020-03-08 23:04 93M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 22:52 38M 
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 22:52 27M 
[DIR]seal/2020-03-08 06:01 -  
[DIR]split/2020-03-08 06:01 -  
[DIR]split_chrom_aware/2020-03-08 06:01 -  
[DIR]supp/2020-03-08 06:01 -  
[ ]suspect.at.step.0.bed2020-03-08 20:12 68K 
[ ]suspect.at.step.1.bed2020-03-08 21:25 53K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 20:12 869K 
[TXT]suspect_2D.at.step.1.txt2020-03-08 21:25 255K 
[DIR]utils/2020-03-08 06:01 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2020-03-08 06:01 351  
[ ]zL1199-3D.1.err2020-03-08 23:42 5.1K 
[ ]zL1199-3D.1.out2020-03-08 23:55 66K 
[ ]zL1199-3D.1.sbatch2020-03-08 06:01 555  
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