Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1148-Ectocarpus_siliculosus_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1360-Ectocarpus_sp._gDNA/SPAdes-3.13-L1360-Ectocarpus_sp._gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1360-Ectocarpus_sp._gDNA/SPAdes-3.13-L1360-Ectocarpus_sp._gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  390,275,831
 Normal Paired: 205,981,546 (52.78%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 184,294,285 (47.22%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 205,981,546 (52.78%)
Unique Reads: 190,892,094 (48.91%)
PCR Duplicates: 15,069,608 (3.86%)
Optical Duplicates: 19,844 (0.01%)
Library Complexity Estimate: 1,337,950,528
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 31,737,604 (8.13% / 16.63%)
Hi-C Contacts: 159,154,490 (40.78% / 83.37%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 70,034,457  (17.94% / 36.69%)
Intra-chromosomal: 89,120,033  (22.84% / 46.69%)
Short Range (<20Kb): 83,473,187  (21.39% / 43.73%)
Long Range (>20Kb): 5,634,331  (1.44% / 2.95%)