Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1110-Nannochloropsis_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1358-Nannochloropsis_oculata_gDNA/SPAdes-3.14-L1358-Nannochloropsis_oculata_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1358-Nannochloropsis_oculata_gDNA/SPAdes-3.14-L1358-Nannochloropsis_oculata_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  297,934,474
 Normal Paired: 225,754,040 (75.77%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 72,180,434 (24.23%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 225,754,040 (75.77%)
Unique Reads: 154,183,376 (51.75%)
PCR Duplicates: 71,522,048 (24.01%)
Optical Duplicates: 48,616 (0.02%)
Library Complexity Estimate: 276,068,293
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,874,223 (3.31% / 6.40%)
Hi-C Contacts: 144,309,153 (48.44% / 93.60%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 64,438,057  (21.63% / 41.79%)
Intra-chromosomal: 79,871,096  (26.81% / 51.80%)
Short Range (<20Kb): 77,918,536  (26.15% / 50.54%)
Long Range (>20Kb): 1,884,376  (0.63% / 1.22%)