Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg//juicer-L142-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg//juicer-L142-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                                                                              
Sequenced Read Pairs:  459,227,177
 Normal Paired: 343,832,652 (74.87%)
 Chimeric Paired: 30,335,424 (6.61%)
 Chimeric Ambiguous: 9,595,313 (2.09%)
 Unmapped: 75,463,788 (16.43%)
 Ligation Motif Present: 163,847,410 (35.68%)
Alignable (Normal+Chimeric Paired): 374,168,076 (81.48%)
Unique Reads: 306,851,440 (66.82%)
PCR Duplicates: 66,199,157 (14.42%)
Optical Duplicates: 1,117,479 (0.24%)
Library Complexity Estimate: 922,698,312
Intra-fragment Reads: 26,778,083 (5.83% / 8.73%)
Below MAPQ Threshold: 96,527,993 (21.02% / 31.46%)
Hi-C Contacts: 183,545,364 (39.97% / 59.82%)
 Ligation Motif Present: 69,092,231  (15.05% / 22.52%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 104,931,677  (22.85% / 34.20%)
Intra-chromosomal: 78,613,687  (17.12% / 25.62%)
Short Range (<20Kb): 55,701,896  (12.13% / 18.15%)
Long Range (>20Kb): 22,911,442  (4.99% / 7.47%)