Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  169,163,291
 Normal Paired: 109,820,140 (64.92%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 59,343,151 (35.08%)
 Ligation Motif Present: 6,888,980 (4.07%)
Alignable (Normal+Chimeric Paired): 109,820,140 (64.92%)
Unique Reads: 90,649,685 (53.59%)
PCR Duplicates: 19,130,257 (11.31%)
Optical Duplicates: 40,198 (0.02%)
Library Complexity Estimate: 277,220,794
Intra-fragment Reads: 17,103,801 (10.11% / 18.87%)
Below MAPQ Threshold: 32,751,504 (19.36% / 36.13%)
Hi-C Contacts: 40,794,380 (24.12% / 45.00%)
 Ligation Motif Present: 539,577  (0.32% / 0.60%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 19,720,916  (11.66% / 21.76%)
Intra-chromosomal: 21,073,464  (12.46% / 23.25%)
Short Range (<20Kb): 15,506,564  (9.17% / 17.11%)
Long Range (>20Kb): 5,566,759  (3.29% / 6.14%)