Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                              
Sequenced Read Pairs:  76,036,154
 Normal Paired: 49,363,308 (64.92%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 26,672,846 (35.08%)
 Ligation Motif Present: 3,096,781 (4.07%)
Alignable (Normal+Chimeric Paired): 49,363,308 (64.92%)
Unique Reads: 44,099,467 (58.00%)
PCR Duplicates: 5,255,428 (6.91%)
Optical Duplicates: 8,413 (0.01%)
Library Complexity Estimate: 214,989,947
Intra-fragment Reads: 8,261,930 (10.87% / 18.73%)
Below MAPQ Threshold: 16,225,882 (21.34% / 36.79%)
Hi-C Contacts: 19,611,655 (25.79% / 44.47%)
 Ligation Motif Present: 259,179  (0.34% / 0.59%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,456,759  (12.44% / 21.44%)
Intra-chromosomal: 10,154,896  (13.36% / 23.03%)
Short Range (<20Kb): 7,466,506  (9.82% / 16.93%)
Long Range (>20Kb): 2,688,308  (3.54% / 6.10%)