Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  187,913,804
 Normal Paired: 119,175,147 (63.42%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 68,738,657 (36.58%)
 Ligation Motif Present: 10,845,413 (5.77%)
Alignable (Normal+Chimeric Paired): 119,175,147 (63.42%)
Unique Reads: 96,011,515 (51.09%)
PCR Duplicates: 23,104,374 (12.30%)
Optical Duplicates: 59,258 (0.03%)
Library Complexity Estimate: 265,912,578
Intra-fragment Reads: 11,156,166 (5.94% / 11.62%)
Below MAPQ Threshold: 26,409,686 (14.05% / 27.51%)
Hi-C Contacts: 58,445,663 (31.10% / 60.87%)
 Ligation Motif Present: 912,052  (0.49% / 0.95%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 30,834,948  (16.41% / 32.12%)
Intra-chromosomal: 27,610,715  (14.69% / 28.76%)
Short Range (<20Kb): 16,080,683  (8.56% / 16.75%)
Long Range (>20Kb): 11,529,836  (6.14% / 12.01%)