Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                              
Sequenced Read Pairs:  70,727,639
 Normal Paired: 44,848,666 (63.41%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 25,878,973 (36.59%)
 Ligation Motif Present: 4,082,791 (5.77%)
Alignable (Normal+Chimeric Paired): 44,848,666 (63.41%)
Unique Reads: 40,385,705 (57.10%)
PCR Duplicates: 4,454,126 (6.30%)
Optical Duplicates: 8,835 (0.01%)
Library Complexity Estimate: 210,493,908
Intra-fragment Reads: 4,663,026 (6.59% / 11.55%)
Below MAPQ Threshold: 15,401,781 (21.78% / 38.14%)
Hi-C Contacts: 20,320,898 (28.73% / 50.32%)
 Ligation Motif Present: 310,694  (0.44% / 0.77%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,194,598  (14.41% / 25.24%)
Intra-chromosomal: 10,126,300  (14.32% / 25.07%)
Short Range (<20Kb): 6,009,037  (8.50% / 14.88%)
Long Range (>20Kb): 4,117,205  (5.82% / 10.19%)