Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                              
Sequenced Read Pairs:  70,727,639
 Normal Paired: 44,848,666 (63.41%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 25,878,973 (36.59%)
 Ligation Motif Present: 4,082,791 (5.77%)
Alignable (Normal+Chimeric Paired): 44,848,666 (63.41%)
Unique Reads: 40,385,705 (57.10%)
PCR Duplicates: 4,454,126 (6.30%)
Optical Duplicates: 8,835 (0.01%)
Library Complexity Estimate: 210,493,908
Intra-fragment Reads: 4,663,026 (6.59% / 11.55%)
Below MAPQ Threshold: 11,332,918 (16.02% / 28.06%)
Hi-C Contacts: 24,389,761 (34.48% / 60.39%)
 Ligation Motif Present: 375,929  (0.53% / 0.93%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,788,069  (18.08% / 31.66%)
Intra-chromosomal: 11,601,692  (16.40% / 28.73%)
Short Range (<20Kb): 6,781,419  (9.59% / 16.79%)
Long Range (>20Kb): 4,820,186  (6.82% / 11.94%)