Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  128,072,777
 Normal Paired: 79,429,315 (62.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 48,643,462 (37.98%)
 Ligation Motif Present: 12,125,937 (9.47%)
Alignable (Normal+Chimeric Paired): 79,429,315 (62.02%)
Unique Reads: 73,352,867 (57.27%)
PCR Duplicates: 6,026,562 (4.71%)
Optical Duplicates: 49,886 (0.04%)
Library Complexity Estimate: 495,967,910
Intra-fragment Reads: 1,920,579 (1.50% / 2.62%)
Below MAPQ Threshold: 30,470,120 (23.79% / 41.54%)
Hi-C Contacts: 40,962,168 (31.98% / 55.84%)
 Ligation Motif Present: 855,551  (0.67% / 1.17%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 26,747,534  (20.88% / 36.46%)
Intra-chromosomal: 14,214,634  (11.10% / 19.38%)
Short Range (<20Kb): 4,094,798  (3.20% / 5.58%)
Long Range (>20Kb): 10,119,716  (7.90% / 13.80%)