Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                              
Sequenced Read Pairs:  56,633,297
 Normal Paired: 35,123,563 (62.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,509,734 (37.98%)
 Ligation Motif Present: 5,361,637 (9.47%)
Alignable (Normal+Chimeric Paired): 35,123,563 (62.02%)
Unique Reads: 33,744,115 (59.58%)
PCR Duplicates: 1,369,395 (2.42%)
Optical Duplicates: 10,053 (0.02%)
Library Complexity Estimate: 438,401,483
Intra-fragment Reads: 883,090 (1.56% / 2.62%)
Below MAPQ Threshold: 10,042,417 (17.73% / 29.76%)
Hi-C Contacts: 22,818,608 (40.29% / 67.62%)
 Ligation Motif Present: 475,710  (0.84% / 1.41%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,265,844  (26.96% / 45.24%)
Intra-chromosomal: 7,552,764  (13.34% / 22.38%)
Short Range (<20Kb): 2,141,952  (3.78% / 6.35%)
Long Range (>20Kb): 5,410,737  (9.55% / 16.03%)