Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  108,451,704
 Normal Paired: 70,006,989 (64.55%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 38,444,715 (35.45%)
 Ligation Motif Present: 4,664,270 (4.30%)
Alignable (Normal+Chimeric Paired): 70,006,989 (64.55%)
Unique Reads: 60,151,394 (55.46%)
PCR Duplicates: 9,827,426 (9.06%)
Optical Duplicates: 28,169 (0.03%)
Library Complexity Estimate: 225,234,061
Intra-fragment Reads: 10,787,457 (9.95% / 17.93%)
Below MAPQ Threshold: 22,192,284 (20.46% / 36.89%)
Hi-C Contacts: 27,171,653 (25.05% / 45.17%)
 Ligation Motif Present: 373,833  (0.34% / 0.62%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,290,772  (12.26% / 22.10%)
Intra-chromosomal: 13,880,881  (12.80% / 23.08%)
Short Range (<20Kb): 9,995,743  (9.22% / 16.62%)
Long Range (>20Kb): 3,885,040  (3.58% / 6.46%)