Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1245-L1246-SSB01-a_amanitin-48h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  108,451,704
 Normal Paired: 70,006,989 (64.55%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 38,444,715 (35.45%)
 Ligation Motif Present: 4,664,270 (4.30%)
Alignable (Normal+Chimeric Paired): 70,006,989 (64.55%)
Unique Reads: 60,151,394 (55.46%)
PCR Duplicates: 9,827,426 (9.06%)
Optical Duplicates: 28,169 (0.03%)
Library Complexity Estimate: 225,234,061
Intra-fragment Reads: 10,787,457 (9.95% / 17.93%)
Below MAPQ Threshold: 16,703,384 (15.40% / 27.77%)
Hi-C Contacts: 32,660,553 (30.12% / 54.30%)
 Ligation Motif Present: 453,121  (0.42% / 0.75%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 16,754,705  (15.45% / 27.85%)
Intra-chromosomal: 15,905,848  (14.67% / 26.44%)
Short Range (<20Kb): 11,280,338  (10.40% / 18.75%)
Long Range (>20Kb): 4,625,375  (4.26% / 7.69%)