Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  105,951,781
 Normal Paired: 66,892,902 (63.14%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 39,058,879 (36.86%)
 Ligation Motif Present: 5,914,686 (5.58%)
Alignable (Normal+Chimeric Paired): 66,892,902 (63.14%)
Unique Reads: 57,036,163 (53.83%)
PCR Duplicates: 9,822,163 (9.27%)
Optical Duplicates: 34,576 (0.03%)
Library Complexity Estimate: 204,669,201
Intra-fragment Reads: 6,789,186 (6.41% / 11.90%)
Below MAPQ Threshold: 21,520,230 (20.31% / 37.73%)
Hi-C Contacts: 28,726,747 (27.11% / 50.37%)
 Ligation Motif Present: 430,274  (0.41% / 0.75%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,255,727  (13.45% / 24.99%)
Intra-chromosomal: 14,471,020  (13.66% / 25.37%)
Short Range (<20Kb): 8,735,348  (8.24% / 15.32%)
Long Range (>20Kb): 5,735,582  (5.41% / 10.06%)