Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1243-L1244-SSB01-a_amanitin-24h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  105,951,781
 Normal Paired: 66,892,902 (63.14%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 39,058,879 (36.86%)
 Ligation Motif Present: 5,914,686 (5.58%)
Alignable (Normal+Chimeric Paired): 66,892,902 (63.14%)
Unique Reads: 57,036,163 (53.83%)
PCR Duplicates: 9,822,163 (9.27%)
Optical Duplicates: 34,576 (0.03%)
Library Complexity Estimate: 204,669,201
Intra-fragment Reads: 6,789,186 (6.41% / 11.90%)
Below MAPQ Threshold: 15,795,248 (14.91% / 27.69%)
Hi-C Contacts: 34,451,729 (32.52% / 60.40%)
 Ligation Motif Present: 520,792  (0.49% / 0.91%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 17,880,974  (16.88% / 31.35%)
Intra-chromosomal: 16,570,755  (15.64% / 29.05%)
Short Range (<20Kb): 9,855,659  (9.30% / 17.28%)
Long Range (>20Kb): 6,714,978  (6.34% / 11.77%)