python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4063 0 2307373 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_1194 0 1781816 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_372 0 1730575 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3215 0 1554418 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3446 0 1408761 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1062 0 1374317 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5267 0 1368742 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3165 0 1355546 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2369 0 1346697 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_756 0 1331574 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2803 0 1303276 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_134 0 1285337 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_827 0 1230988 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_7094 0 1224751 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1616 0 1181927 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3374 0 1172245 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1420 0 1163086 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_201 0 1135977 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_349 0 1133873 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_809 0 1089098 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2834 0 1070236 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5870 0 1048601 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3585 0 1047520 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_14 0 1026920 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1273 0 1022653 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1232 0 1015878 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3549 0 1011889 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6567 0 986623 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_406 0 985046 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5112 0 978213 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9183 0 965710 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3966 0 957305 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3656 0 956803 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3763 0 955753 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6115 0 954293 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2799 0 948591 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1257 0 939483 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1744 0 937726 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_411 0 926252 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_403 0 924033 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3381 0 919386 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_8651 0 915387 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2875 0 914889 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3653 0 913655 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4079 0 905698 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3926 0 904018 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2472 0 885627 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_374 0 885259 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3371 0 872476 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2295 0 856288 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9278 0 855836 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2116 0 855715 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8675 0 854340 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8529 0 844543 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_11289 0 843750 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4940 0 831593 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3327 0 830263 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_550 0 828053 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1203 0 825486 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1879 0 823564 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8193 0 820456 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3440 0 817496 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1041 0 816248 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4847 0 812425 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2492 0 800445 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3087 0 798819 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2045 0 798379 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4066 0 797444 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4012 0 794870 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2115 0 794718 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2854 0 794412 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_584 0 789575 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4501 0 788724 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_11241 0 787899 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5961 0 786672 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_427 0 784742 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_499 0 779080 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1797 0 778836 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3068 0 777239 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3510 0 776438 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2301 0 774380 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3892 0 772849 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2810 0 772088 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10678 0 771219 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2091 0 770724 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3149 0 769999 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_832 0 767170 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_195 0 766871 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2614 0 765903 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2056 0 764317 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1123 0 762457 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4840 0 761000 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8670 0 759274 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7261 0 758458 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10043 0 758293 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5303 0 757293 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8278 0 755445 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_536 0 755154 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_1802 0 754143 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1904 0 753606 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1868 0 751864 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_555 0 750693 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2657 0 747499 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_10089 0 745407 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3577 0 740772 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4977 0 738395 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3224 0 736858 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_647 0 732718 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2543 0 732596 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_591 0 731266 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7749 0 723789 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3524 0 723352 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1281 0 722107 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3302 0 720546 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_194 0 720347 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_545 0 720328 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1807 0 719577 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3107 0 713102 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2565 0 707643 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_4605 0 707582 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2831 0 702431 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_794 0 702404 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3131 0 701880 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2793 0 700905 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3739 0 699750 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1530 0 698170 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3347 0 697722 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_453 0 697170 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3997 0 696727 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4051 0 695290 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4371 0 694118 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4494 0 688434 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4038 0 686906 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6962 0 686047 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3891 0 684972 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3696 0 684167 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3794 0 681765 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6521 0 680043 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3338 0 677562 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2530 0 677287 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3059 0 677140 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9356 0 674282 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10335 0 673725 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3243 0 673488 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_378 0 671425 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3196 0 668302 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4068 0 667534 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3497 0 667218 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4719 0 664996 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_796 0 664152 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9490 0 659380 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10759 0 659018 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4305 0 658271 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4513 0 657829 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6844 0 657384 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7876 0 655771 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1329 0 645318 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2510 0 644108 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7323 0 639332 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5227 0 638958 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3665 0 636226 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6700 0 635190 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_3036 0 635112 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_640 0 634985 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2252 0 634845 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4876 0 634239 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_998 0 631677 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6966 0 629689 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_702 0 629372 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2090 0 627676 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3061 0 627323 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1692 0 626302 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2483 0 625791 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8764 0 624852 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10817 0 623333 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4416 0 620597 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5683 0 620296 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3807 0 620215 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2564 0 619600 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10557 0 619000 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2351 0 618575 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2216 0 617661 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4044 0 615960 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_11223 0 613602 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5078 0 612003 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3470 0 611579 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1963 0 611157 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5108 0 610266 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1724 0 609736 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_4459 0 608827 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3291 0 602985 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2863 0 601412 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3860 0 600954 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10959 0 600749 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10916 0 600457 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1249 0 598021 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1340 0 597352 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6282 0 593616 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5305 0 591665 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7607 0 589729 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3680 0 588853 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1832 0 588144 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5421 0 587910 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3841 0 586674 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10291 0 586646 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6362 0 584457 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10528 0 582824 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_544 0 582479 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_891 0 582214 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1435 0 582213 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_6341 0 578299 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4476 0 578019 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9094 0 577553 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1706 0 576503 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3463 0 574745 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4960 0 571690 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2249 0 570697 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1304 0 570173 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7012 0 569532 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4122 0 568606 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7208 0 567051 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1018 0 566639 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3346 0 566603 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_852 0 566278 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6523 0 566204 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5397 0 565995 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4391 0 564690 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3586 0 564137 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4266 0 563692 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1000 0 563408 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2996 0 562584 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3366 0 562332 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8408 0 561978 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1155 0 561465 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3498 0 560821 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2581 0 560227 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3357 0 559970 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3547 0 557169 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3503 0 554748 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2623 0 554657 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1472 0 554594 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8361 0 554183 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4730 0 553828 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4319 0 553576 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6522 0 552713 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2883 0 551768 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3211 0 551656 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6720 0 551478 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3512 0 550478 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3713 0 550221 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1074 0 549456 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7405 0 547483 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1087 0 546826 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10922 0 546808 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1647 0 546406 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2561 0 546065 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3348 0 545784 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3570 0 544895 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_680 0 544369 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1835 0 543983 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_445 0 543164 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_3438 0 542759 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2913 0 542348 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3729 0 541723 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8274 0 541507 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10801 0 541383 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_811 0 539710 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8222 0 539471 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2528 0 539394 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3056 0 537272 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5062 0 536404 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4167 0 536336 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1212 0 536012 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1564 0 535219 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1032 0 534905 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3740 0 533571 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1423 0 533530 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4138 0 533202 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5657 0 532834 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6948 0 532182 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_166 0 532010 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6907 0 531713 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3226 0 531449 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_1999 0 530492 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3248 0 530226 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_196 0 529711 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz scaffold_3979 0 529675 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4050 0 529415 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5517 0 528814 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7100 0 527945 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3485 0 525014 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4000 0 524390 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3937 0 524346 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3546 0 523573 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1168 0 521576 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4086 0 521328 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9268 0 521275 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2450 0 520745 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3198 0 519491 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1446 0 518532 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10960 0 517894 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_11389 0 516335 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_500 0 515844 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_11371 0 515698 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2168 0 515137 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6284 0 514547 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_481 0 514291 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8162 0 512755 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2384 0 512572 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_981 0 511978 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8161 0 511675 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4671 0 511222 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1915 0 510736 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5974 0 510477 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1872 0 509839 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_389 0 508903 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3231 0 508503 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7246 0 507703 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10938 0 506490 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3161 0 505884 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6008 0 505881 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8078 0 505635 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2243 0 505314 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1247 0 504754 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2128 0 503305 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_459 0 503114 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7548 0 503040 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3053 0 502041 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10717 0 501580 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3385 0 500550 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2989 0 499677 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2390 0 499588 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2587 0 499069 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8837 0 496975 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5161 0 495454 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8888 0 494777 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4085 0 493233 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7034 0 492089 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2746 0 491755 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_644 0 490356 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1608 0 489820 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7333 0 489787 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8023 0 486258 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1349 0 485825 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2484 0 485797 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10882 0 485247 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10374 0 485189 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9099 0 485094 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3435 0 484857 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4755 0 484480 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3191 0 484440 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_424 0 484001 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3994 0 483821 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3806 0 481989 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_399 0 481910 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3049 0 480364 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3308 0 479684 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6576 0 479320 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6898 0 479226 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1007 0 479089 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3146 0 477842 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9880 0 477690 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4660 0 477306 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_11088 0 475508 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4389 0 475316 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7601 0 474834 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4203 0 474711 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2253 0 474527 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2742 0 473975 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3630 0 473430 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1361 0 472814 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2808 0 472648 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3956 0 472408 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_516 0 471260 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_694 0 470892 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_921 0 470723 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_4190 0 470527 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5426 0 470431 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_352 0 470423 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_8729 0 470366 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1600 0 470193 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_7706 0 470079 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6138 0 469951 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1012 0 469314 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_9790 0 468580 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3441 0 468065 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5740 0 466962 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_1035 0 466239 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2887 0 465383 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10883 0 465206 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_6636 0 465086 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_10239 0 464812 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_962 0 464386 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_989 0 463841 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3864 0 463473 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_717 0 463083 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_5921 0 462739 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3859 0 462312 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_2171 0 462112 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &
python /oak/stanford/groups/akundaje/marinovg/code/Hi-C/InteractionMatrix-heatmap.py L142+L533+L534_Hi-C.all.Flye-assembly.genome.1kb.dedup.25mers.noInterchromosomalInteractions.matrix.bgz contig_3855 0 461549 5000 tabix 1 1 0.01 0.2 Reds 50,50 L142+L533+L534_Hi-C.all.Flye-assembly.genome.dedup.5kb.25mers &