#!/bin/bash
#SBATCH --job-name=zJ533+534-1
#SBATCH --output=zJ533+534.1.out
#SBATCH --error=zJ533+534.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533+L534-Symbiodinium_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533+L534-Symbiodinium_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa