Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -S final -t 60 -D /srv/scratch/marinovg//juicer-L142-symbB.v1.0.genome.FINAL-final-post-review -d /srv/scratch/marinovg//juicer-L142-symbB.v1.0.genome.FINAL-final-post-review -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/bwa-indexes/symbB.v1.0.genome.FINAL.fasta                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  459,227,177
 Normal Paired: 343,829,216 (74.87%)
 Chimeric Paired: 30,842,927 (6.72%)
 Chimeric Ambiguous: 8,935,891 (1.95%)
 Unmapped: 75,619,143 (16.47%)
 Ligation Motif Present: 163,847,410 (35.68%)
Alignable (Normal+Chimeric Paired): 374,672,143 (81.59%)
Unique Reads: 306,939,034 (66.84%)
PCR Duplicates: 66,615,228 (14.51%)
Optical Duplicates: 1,117,881 (0.24%)
Library Complexity Estimate: 918,759,872
Intra-fragment Reads: 78,854,890 (17.17% / 25.69%)
Below MAPQ Threshold: 55,333,352 (12.05% / 18.03%)
Hi-C Contacts: 172,750,792 (37.62% / 56.28%)
 Ligation Motif Present: 60,605,975  (13.20% / 19.75%)
 3' Bias (Long Range): 62% - 38%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 135,725,478  (29.56% / 44.22%)
Intra-chromosomal: 37,025,314  (8.06% / 12.06%)
Short Range (<20Kb): 26,092,723  (5.68% / 8.50%)
Long Range (>20Kb): 10,932,405  (2.38% / 3.56%)