Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L142+L533+L534-Symbiodinium_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L142+L533+L534-Symbiodinium_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                    
Sequenced Read Pairs:  1,366,059,621
 Normal Paired: 844,351,549 (61.81%)
 Chimeric Paired: 38,491,474 (2.82%)
 Chimeric Ambiguous: 9,510,816 (0.70%)
 Unmapped: 473,705,782 (34.68%)
 Ligation Motif Present: 367,989,328 (26.94%)
Alignable (Normal+Chimeric Paired): 882,843,023 (64.63%)
Unique Reads: 784,133,068 (57.40%)
PCR Duplicates: 97,563,450 (7.14%)
Optical Duplicates: 1,146,505 (0.08%)
Library Complexity Estimate: 3,684,351,684
Intra-fragment Reads: 43,399,185 (3.18% / 5.53%)
Below MAPQ Threshold: 203,639,912 (14.91% / 25.97%)
Hi-C Contacts: 537,093,971 (39.32% / 68.50%)
 Ligation Motif Present: 112,482,787  (8.23% / 14.34%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 439,358,146  (32.16% / 56.03%)
Intra-chromosomal: 97,735,825  (7.15% / 12.46%)
Short Range (<20Kb): 89,191,454  (6.53% / 11.37%)
Long Range (>20Kb): 8,543,496  (0.63% / 1.09%)