/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.0-linux-intel-x86_64/binaries/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam27-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/hard_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_CTTGTA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-120517_PINKERTON_0180_BC0RRPACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_CCGTCC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTCCGC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-130403_MONK_0275_AC1Y6RACXX_L8_GTGAAA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1-151020_MONK_0446_AC7LDNACXX_L1_ATCACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-1.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-2-151020_MONK_0446_AC7LDNACXX_L1_GATCAG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-0h-3-151020_MONK_0446_AC7LDNACXX_L2_ACTGAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_CGTACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GAGTGG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-27C-d8.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-1-151020_MONK_0446_AC7LDNACXX_L1_TAGCTT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h-2-151020_MONK_0446_AC7LDNACXX_L1_GGCTAC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-12h.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-1-151020_MONK_0446_AC7LDNACXX_L1_TTAGGC/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h-2-151020_MONK_0446_AC7LDNACXX_L1_ACTTGA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-3h.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1-2-151020_MONK_0446_AC7LDNACXX_L1_GTTTCG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d1.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-1-151020_MONK_0446_AC7LDNACXX_L1_CGTACG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2-2-151020_MONK_0446_AC7LDNACXX_L1_GAGTGG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d2.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-1-151020_MONK_0446_AC7LDNACXX_L1_ACTGAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3-2-151020_MONK_0446_AC7LDNACXX_L2_ATTCCT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d3.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-1-151020_MONK_0446_AC7LDNACXX_L2_CGATGT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4-2-151020_MONK_0446_AC7LDNACXX_L2_TGACCA/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d4.merged/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-1-151020_MONK_0446_AC7LDNACXX_L2_ACAGTG/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8-2-151020_MONK_0446_AC7LDNACXX_L2_GCCAAT/soft_filtered_transcripts.min30aa.ORF.faa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A --tblout SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-Symbiodinium_minitum-34C-d8.merged/soft_filtered_transcripts.min30aa.ORF.faa