zcat GCA_001417965.1_Aiptasia_genome_1.1_genomic.25mers.fa.gz | /oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic -p 8 -v 0 --k 2 -m 1 -t --best --strata -f --sam-nh --sam - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools view -bT /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools sort - GCA_001417965.1_Aiptasia_genome_1.1_genomic.25mers.unique
zcat GCA_001417965.1_Aiptasia_genome_1.1_genomic.36mers.fa.gz | /oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic -p 8 -v 0 --k 2 -m 1 -t --best --strata -f --sam-nh --sam - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools view -bT /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools sort - GCA_001417965.1_Aiptasia_genome_1.1_genomic.36mers.unique
zcat GCA_001417965.1_Aiptasia_genome_1.1_genomic.50mers.fa.gz | /oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic -p 8 -v 0 --k 2 -m 1 -t --best --strata -f --sam-nh --sam - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools view -bT /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools sort - GCA_001417965.1_Aiptasia_genome_1.1_genomic.50mers.unique
zcat GCA_001417965.1_Aiptasia_genome_1.1_genomic.75mers.fa.gz | /oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic -p 8 -v 0 --k 2 -m 1 -t --best --strata -f --sam-nh --sam - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools view -bT /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools sort - GCA_001417965.1_Aiptasia_genome_1.1_genomic.75mers.unique
zcat GCA_001417965.1_Aiptasia_genome_1.1_genomic.100mers.fa.gz | /oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic -p 8 -v 0 --k 2 -m 1 -t --best --strata -f --sam-nh --sam - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools view -bT /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bowtie-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa - | /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools sort - GCA_001417965.1_Aiptasia_genome_1.1_genomic.100mers.unique