python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870465-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870465-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870466-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870466-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870467-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870467-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870507-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870507-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870508-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870508-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870509-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870509-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870516-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870516-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870522-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870522-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870524-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870524-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SRR870525-TopHat-2.0.8/accepted_hits.bam SAMstats-SRR870525-TopHat-2.0.8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &